Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq23076 125 5e-24 seq2836 123 2e-23 seq12300 111 1e-19 seq58939 109 4e-19 seq30213 89.7 4e-13 seq18120 87.8 1e-12 seq251132 84.2 2e-11 >seq23076 Length=20243 Score = 125 bits (138), Expect = 5e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | |||| ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 11692 CCTCCCCTCAATCGCAGGACCAAGTGCAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAG 11633 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 || | ||| |||| |||||||||||||| || || || || ||||| || || | || Sbjct 11632 AGCGTGCGACCGTCCTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCGGGTGGG 11573 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || || | | || ||||||| ||| ||| Sbjct 11572 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATAGTGTCTGACGACTCTACC 11513 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| || ||||| ||||| |||| || || ||||| |||||||| Sbjct 11512 TCCAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 11466 Score = 95.1 bits (104), Expect = 9e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || ||||| ||||| || || || ||||| |||| || | ||||||||| ||||| Sbjct 11885 CTCCTTCTGAATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCAAGCTGCTTACCAGCAAA 11826 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| |||||| || || | |||| |||||||||||| |||||| || ||| Sbjct 11825 GATCAATCGCTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATT 11766 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||| ||||| | ||||| || || || || | || || || Sbjct 11765 GTCGATGGTGTCGGAAGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAAC 11706 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 11705 GAAGATCTGCAT 11694 >seq2836 Length=35635 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || |||||||| || ||||| |||||||| | ||| | || | || || | ||| Sbjct 31539 ATGCAGGGTGCTCTCCTTCTGAATGTTGTAATCTGCTAGGGTGCGGCCATCCTCAAGCTG 31598 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||| || ||||| || || | ||| ||||||| ||||| | ||||||||||| ||||| Sbjct 31599 CTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGGGATC-CCCTCCTTGTCCTGAATCT 31657 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||| ||| | | | | || || ||||||||| | || ||||| ||||| | Sbjct 31658 TCGCTTTCACATTATCGATGGTATCAGAACTCTCCACCTCAAGTGTGATCGTCTTTCCTG 31717 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| |||||||||||||| Sbjct 31718 TCAAGGTTTTCACAAAAATCTGCAT 31742 Score = 105 bits (116), Expect = 5e-18 Identities = 148/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || |||||||| ||||| |||||||| || | || | ||| | || || | ||| Sbjct 31311 ATGCAGAGTGCTCTCCTTTTGGATATTGTAGTCTGCAAGGGTGCGACCATCCTCAAGCTG 31370 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTCCTTGTCGCTAATCT 48681 ||| || || || || |||| ||| ||||||| ||||| | ||||||||||| ||||| Sbjct 31371 CTTTCCAGCGAAGATGAGTCTCTGCTGATCCGGTGGGATC-CCCTCCTTGTCCTGAATCT 31429 Query 48682 TTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCG 48741 | ||| || | | | | || || ||||||||| | ||||| || || |||| Sbjct 31430 TAGCTTTCACGTTATCAATGGTATCAGAACTCTCCACCTCAAGTGTAATTGTCTTGCCCG 31489 Query 48742 TCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || || ||||| |||||||| Sbjct 31490 TCAGTGTCTTCACAAATATCTGCAT 31514 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 48576 TCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAAT 48635 || ||||||||||||||||||| ||| | || | || || | ||||| || ||||| Sbjct 31780 TCCTTTTGAATATTGTAATCAGCAAGAGTACGGCCATCCTCAAGTTGCTTCCCTGCAAAG 31839 Query 48636 ATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAA 48695 || || | ||| ||||||| |||| || ||||| || |||||| ||| ||| | Sbjct 31840 ATGAGCCTCTGCTGATCCGGAGGAATCCCTTCCTTATCTTGGATCTTTGCTTTGACATTA 31899 Query 48696 CCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACA 48755 | | | || || ||||||||| | || || || ||||| || | ||| || ||| Sbjct 31900 TCAATTGTATCGGAGCTCTCCACCTCAAGGGTGATAGTCTTTCCAGTAAGAGTCTTCACA 31959 Query 48756 AAAATCTGCAT 48766 ||||||||||| Sbjct 31960 AAAATCTGCAT 31970 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| || || |||||||||| | | | || | || ||| Sbjct 32674 ACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCAGCCAAAGTACGCCCATCCTCC 32733 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 ||||| || || ||||| ||||| | ||| || || | || | ||||||||||| | Sbjct 32734 AACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGAGGGATTCCCTCCTTGTCCTGA 32793 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 || || ||| ||| | | | | || || ||| ||||| | || || || ||| Sbjct 32794 ATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCTCGACCTCGAGAGTTATGGTCTTT 32853 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || | |||||| ||||| ||||||||| Sbjct 32854 CCAGTGAGAGTTTTGACAAAGATCTGCATC 32883 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| || || | |||| || || || ||| || ||||| |||||||| | Sbjct 32428 CCACCCCTGAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCGGCC 32487 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | |||| | || || | |||||| || || || || || | ||| ||||| | |||| Sbjct 32488 AAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATTAGCCTCTGCTGATCTGGGGGA 32547 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || || ||||| ||| ||| || ||| | | | | || || ||| ||| Sbjct 32548 ATTCCTTCTTTGTCCTGAATTTTTGCCTTCACATTATCTATGGTATCAGAGCTCTCAACC 32607 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || | ||||| || ||||| || | || || ||||||||||||||| Sbjct 32608 TCAAGAGTAATAGTCTTTCCAGTGAGTGTCTTGACAAAAATCTGCATC 32655 >seq12300 Length=44855 Score = 111 bits (122), Expect = 1e-19 Identities = 154/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||||||||| || || ||| ||||| || |||||||| | || | | | Sbjct 12846 CGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCTAAGGTCCTTCCA 12905 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || |||||||||||||| ||||| |||| | ||| || |||| ||||| ||||| ||| Sbjct 12906 TCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGAATACCCTCTTTG 12965 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | | || || ||| ||||||| ||||| Sbjct 12966 TCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAACCTCCAAAGTAATG 13025 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||||||| ||||| || || ||||| ||||||||| Sbjct 13026 GTTTTTCCAGTCAAGGTCTTAACAAATATCTGCATC 13061 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| ||||| ||||||||||| | ||| ||| | || || | |||||| || ||||| Sbjct 12413 CTCCTTTTGGATATTGTAATCCGCCAGAGTTCTTCCATCTTCAAGCTGCTTGCCTGCAAA 12472 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||| || | || ||||||| |||| ||||||||||| ||||||| ||| ||| Sbjct 12473 TATAAGCCTTTGCTGATCCGGAGGAATTCCCTCCTTGTCCTGAATCTTTGCTTTCACATT 12532 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | | || || ||| ||||||| ||||| || || || ||||| || || || Sbjct 12533 ATCAATTGTATCAGAACTCTCAACCTCCAATGTAATGGTCTTCCCTGTCAAGGTCTTCAC 12592 Query 48755 AAAAATCTGCATC 48767 |||||||||||| Sbjct 12593 GAAAATCTGCATC 12605 Score = 95.1 bits (104), Expect = 9e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 48552 CGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCG 48611 |||| ||||| ||| || || ||| || |||||||||||||||| || | | | Sbjct 12618 CGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGGGTCCTCCCA 12677 Query 48612 TCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTG 48671 || || | |||||| || ||||| || || | || || || | || | |||||| ||| Sbjct 12678 TCTTCAAGCTGCTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGGATGCCCTCTTTG 12737 Query 48672 TCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATC 48731 || ||||| || ||| | | || || || || ||||||| || || Sbjct 12738 TCTTGTATCTTCGCCTTGACATTGTCAATAGTATCCGAACTTTCAACCTCCAAGGTTATG 12797 Query 48732 GTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||||||||||||| || |||||||||||||| Sbjct 12798 GTTTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 12832 >seq58939 Length=9406 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 48557 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTC 48616 |||||| || || || ||| || || || ||||| ||||| || | ||| |||| || Sbjct 135 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTACGACCGTCCTC 194 Query 48617 CAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCT 48676 ||||||||| ||||| || ||||| ||||| || |||| ||||| ||||||||||| Sbjct 195 CAACTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 254 Query 48677 AATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTT 48736 ||||| || ||| | | | ||||| | ||||| |||| || || || || Sbjct 255 GATCTTCGACTTGACATTGTCGATGGTGTCTGATGATTCCACTTCCAATGTGATGGTCTT 314 Query 48737 TCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||| || | ||| || || || |||||||| Sbjct 315 TCCAGTAAGAGTCTTGACGAAGATCTGCAT 344 >seq30213 Length=64460 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || ||||| | || ||| ||||| || | || ||| || || || ||||| || || Sbjct 40922 CCTCCCCTCAACCTCAAGACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGAA 40981 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| |||| |||| || | |||||| ||||| || |||| |||||| ||||| | |||| Sbjct 40982 AGAGTTCGTCCGTCCTCGAGCTGCTTTCCGGCGAAGATCAATCGCTGCTGATCAGGGGGA 41041 Query 48660 ACGCCCTCCTTGTC 48673 | ||||||||||| Sbjct 41042 ATTCCCTCCTTGTC 41055 >seq18120 Length=99179 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || || ||||| || || || |||| |||| || | |||||| ||||| || Sbjct 92557 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 92498 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||||||||| || || | ||||| ||||||||||| ||||| || || Sbjct 92497 GATCAGTCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 92438 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || | ||||||||| | || ||||| || ||||| | || || || Sbjct 92437 GTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGAC 92378 Query 48755 AAAAATCTGCATC 48767 ||| || |||||| Sbjct 92377 AAAGATTTGCATC 92365 >seq251132 Length=129 Score = 84.2 bits (92), Expect = 2e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| ||||| || || ||| | || |||| || | |||||| ||||| || Sbjct 8 CTCTTTCTGAATGTTGTAGTCGGACAGAGTACGTCCGTCCTCGAGCTGCTTGCCGGCGAA 67 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 ||||| |||||||| || | ||||| ||||||||||| Sbjct 68 GATCAGACGCTGTTGGTCTGGGGGAATTCCCTCCTTGTC 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 378375236923545