Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq7860 131 2e-25 seq862 122 1e-22 seq345864 114 1e-20 seq4549 113 5e-20 seq524375 109 6e-19 seq5622 109 6e-19 >seq7860 Length=10955 Score = 131 bits (144), Expect = 2e-25 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 164857 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 164916 |||||| ||| | || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 6713 AGGGGATTTTACT-CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 6655 Query 164917 GTGCCTTCGCCCTAATTGGTTTCATGCTCCGCCAGTTTGAGCTGGCACG-TCTCATTGGT 164975 | || || | ||||| ||||||||| | || || ||||| || || || ||| | | Sbjct 6654 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 6595 Query 164976 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 165035 | || ||||| ||||| || || ||||||| ||| |||||||||||||| || ||| Sbjct 6594 -TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 6536 Query 165036 CTTATCTACCCACTGGGTCAGTCCAGTTGGTTTTTCGCTCC 165076 | || || ||||| |||||||| ||||||| || || || Sbjct 6535 TTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq862 Length=327473 Score = 122 bits (134), Expect = 1e-22 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 165171 GGTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTA 165230 ||| | ||||| | || |||||| |||||||||||| | || | |||||||| ||| Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 165231 TACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAG 165290 | || ||||| || |||||||| || | || || | | || || | ||||| Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 165291 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCT 165350 |||||||| |||||||| | |||||||| ||||| || ||||| || ||| | ||||| Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 165351 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 165385 || || | ||| | ||||| || ||||| ||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq345864 Length=152 Score = 114 bits (126), Expect = 1e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 165051 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 165110 ||||| || |||||||||| ||||| ||||| || ||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 165111 TTGTTCCTTCAAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCA 165170 ||||| | ||||| ||||| |||||||| || ||||| ||||||||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 165171 GGTATCTTGGGAG 165183 ||| | || |||| Sbjct 123 GGTGTATTAGGAG 135 >seq4549 Length=62305 Score = 113 bits (124), Expect = 5e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 165291 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCT 165350 |||||||| |||||||| || |||| ||| ||||| || ||||| | |||| ||||| Sbjct 53403 ACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCC 53344 Query 165351 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 165410 | || | ||| | || || || || || ||||| || | | ||| | || | Sbjct 53343 GATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGG 53284 Query 165411 TCTATTGGCATTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAG 165470 || |||| || ||||||| |||| ||||| ||||| || || ||| | ||| || Sbjct 53283 GCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAA 53224 Query 165471 ATCAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCT 165507 ||| | |||||| ||||||| ||||||||||| |||| Sbjct 53223 ATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq524375 Length=364 Score = 109 bits (120), Expect = 6e-19 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 162892 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 162951 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 162952 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 163010 ||||| || || || ||| | ||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 163011 CCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTC 163052 ||||||||||| || || ||||||||||| || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq5622 Length=97820 Score = 109 bits (120), Expect = 6e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 165492 GAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTACGTGCTTGGTTG 165551 ||||||||||| |||||||||||||| | || || |||||||| | |||||||| || Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 165552 GCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGC 165611 ||| || |||||||| ||||||||| |||| ||||| || || || | || | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 165612 AACGCCCTTTAAT 165624 ||||| ||||||| Sbjct 54854 AACGCTCTTTAAT 54842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559324052170200