Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq7860 152 5e-32 seq4549 138 1e-27 seq862 122 9e-23 seq524375 96.9 4e-15 seq345864 96.9 4e-15 seq13424 82.4 8e-11 >seq7860 Length=10955 Score = 152 bits (168), Expect = 5e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 10094 GGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTA 10153 || || || ||| ||||||| || |||||||| || || | |||| || || |||||| Sbjct 6685 GGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTCATGTTA 6626 Query 10154 CGCCAGTTTGAGCTGGCGAGATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCT 10213 || || ||||| || || ||| || | | |||||||| ||||| ||||| || ||| Sbjct 6625 CGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCATTCTCT 6566 Query 10214 GGGCCTATTGCTGTTTTTGTCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGG 10273 | || |||||||||||||| ||| ||| | || |||||||| || |||||| ||||| Sbjct 6565 GCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTCTGGTTGG 6506 Query 10274 TTCTTTGCGCCGAGTTTCGGCGTCGCGGC 10302 ||||||||||| ||||| || || | ||| Sbjct 6505 TTCTTTGCGCCTAGTTTTGGTGTTGGGGC 6477 >seq4549 Length=62305 Score = 138 bits (152), Expect = 1e-27 Identities = 186/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 10457 GCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACT 10516 ||||| || ||| |||||| | | ||||||| || | || ||||| ||||| || Sbjct 53445 GCAAATACATTCCGTGCTTTTAACATAACTCAAGCTAAATAAACTTATTCAATGGTCACC 53386 Query 10517 GCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCAT 10576 ||||||| || |||||||| || |||| |||||||| | ||||| | ||| | || Sbjct 53385 GCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACAC 53326 Query 10577 TTCTTTATGCTGTTTGTACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGT 10636 |||||||| | |||||||| | | ||| | || | || ||||||| ||||| Sbjct 53325 TTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGT 53266 Query 10637 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGAT 10696 || |||| || || ||||| || || || | | |||||| ||| | || || ||||| Sbjct 53265 CTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGAT 53206 Query 10697 CCTGAATTTGAGACGTTCT 10715 |||||||||||||| |||| Sbjct 53205 CCTGAATTTGAGACTTTCT 53187 >seq862 Length=327473 Score = 122 bits (134), Expect = 9e-23 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 10379 GGTATACTGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTT 10438 ||| || |||| | || || |||| || || || || | || ||||||| || | Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 10439 TATCAAGATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAG 10498 | | ||||||| || ||||| || ||| | ||| || | ||||||| ||||| Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 10499 ACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGC 10558 || ||||| ||||| || ||||||| || |||||||| || ||||| ||| ||||| | Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 10559 AATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTAC 10595 ||||||| ||| | |||||||||||| | ||||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGTAC 255344 >seq524375 Length=364 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/165 (74%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 8248 TTTTGCGAATGGGTCACTTCGACCAATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTC 8307 || ||||||||||| || || | || ||| | || |||| |||||||| ||||| Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 8308 ATGATCCCAACCCTTCTTGCCGCTACAATTTGC---TTCATTACCGCATTCGTTGCTGCT 8364 |||||||| ||||| ||| | | ||| | | || |||| || ||| | |||||| Sbjct 256 ATGATCCCTACCCTA-TTGAC--TGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCT 312 Query 8365 CCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGGATCT 8409 ||||||||||||||||| || ||||| || || ||| |||| ||| Sbjct 313 CCTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCT 357 >seq345864 Length=152 Score = 96.9 bits (106), Expect = 4e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 10269 GTTGGTTCTTTGCGCCGAGTTTCGGCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCC 10328 ||||||| ||||| || ||||| || || || || || ||||| ||| || | || ||| Sbjct 13 GTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCC 72 Query 10329 AGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATACTGG 10388 | || || ||||| ||||| || || || |||||||||||||| || |||||| || | | Sbjct 73 AAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAG 132 Query 10389 GAG 10391 ||| Sbjct 133 GAG 135 >seq13424 Length=38927 Score = 82.4 bits (90), Expect = 8e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 8965 GGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAGAAGCTTGCATTTCTTCCTC 9024 || || ||||||||||||||||| ||| || |||||| | || ||||||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 9025 GCTGCGTGGCCTGTGGTGGGAATCTGGTTTACCGC 9059 || || |||||||| || || |||||||| ||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 512916836760000