Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq2836 84.2 2e-11 seq12300 82.4 6e-11 >seq2836 Length=35635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || ||||| || || || ||| ||| ||| Sbjct 32426 ATGCAGATCTTTGTTAAAACTCTTACAGGTAAGACAATCACTTTGGAAGTTGAAAGCTCA 32367 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || |||| ||| || ||||||||||| | || |||||| Sbjct 32366 GACACAATCGATAATGTCAAAGCAAAGATACAAGACAAAGAGGGTATTCCTCCAGATCAG 32307 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||| | ||||||||||| || ||| | || ||| | |||| |||| || || ||| Sbjct 32306 CAGAGATTGATCTTTGCGGGAAAGCAACTTGAGGATGGTCGAACTTTGGCTGACTACAAC 32247 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| ||||| || || |||| |||| Sbjct 32246 ATTCAGAAAGAGTCCACCTTGCATTTGGT 32218 >seq12300 Length=44855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| |||||||| || || || || || ||||||||||| || || ||| Sbjct 13060 ATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTCC 13001 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| || ||| ||||||||||| | ||| || || Sbjct 13000 GATACCATTGACAATGTTAAGGCTAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 12941 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| | || ||||| || || || ||||||||| | || | |||||||| ||| Sbjct 12940 CAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAAC 12881 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || ||||| || || || ||||| |||| | |||| || || || || Sbjct 12880 ATCCAAAAGGAGTCGACCCTGCATTTGGTGCTGCGATTGCGTGGTGGAAT 12831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422543329900785