Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq7860 129 6e-25 seq862 114 1e-20 seq524375 98.7 1e-15 seq345864 87.8 2e-12 seq5622 82.4 8e-11 >seq7860 Length=10955 Score = 129 bits (142), Expect = 6e-25 Identities = 162/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 162368 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 162427 |||||| || | || ||||| ||| | || || || ||||||||||| || |||||||| Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 162428 AGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTA 162486 || |||| ||| |||||||||||| | || || |||||||| || ||| || || | Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 6595 Query 162487 TTCGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 162546 | || ||||| ||||| || || ||||| | ||| |||||||| || ||| ||| || Sbjct 6594 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCT 6535 Query 162547 TTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACC 162586 | || ||||| | || || || |||||||| || || Sbjct 6534 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq862 Length=327473 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 162690 GGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAGAT 162749 |||| ||| |||| | |||||||||||| | || | |||||||| | | |||||| Sbjct 255137 GGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGAT 255196 Query 162750 GGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATTCG 162809 || || ||||| || || | || || || | || || | |||||||| ||||| Sbjct 255197 GGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCA 255256 Query 162810 ATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGT 162869 ||||| || | |||||||| ||||| || || || || ||| ||||| || || | | Sbjct 255257 ATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACAT 255316 Query 162870 TGGTTGCATTTCTTTATGCTCTTTGT 162895 ||||| |||||||||||| | ||||| Sbjct 255317 TGGTTACATTTCTTTATGTTTTTTGT 255342 >seq524375 Length=364 Score = 98.7 bits (108), Expect = 1e-15 Identities = 115/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 160885 TGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCCC 160944 ||||| |||||||| || ||||||||||| | |||||||| || || || ||||| || Sbjct 205 TGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTAATGATCCCT 264 Query 160945 TGCTTGCTCGCTGCTACCATT-TGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGA 161003 | | | |||| ||| ||||| || ||||||||| | | |||||| |||||||| Sbjct 265 ACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCCTCCTGTGGA 323 Query 161004 CATCGACGGCATTCGTGAACCCGTCGCTGGTTC 161036 |||||| || || ||||| || || |||| || Sbjct 324 CATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq345864 Length=152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 162573 TGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAA 162632 ||||| || || || || || || |||||||||||||| ||| | | || ||||| Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 162633 GGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGT 162683 || |||||||||||||| ||||| ||||| || |||||||| || || ||| Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGT 125 >seq5622 Length=97820 Score = 82.4 bits (90), Expect = 8e-11 Identities = 96/130 (74%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 163000 CTGAGTTTGAGACGTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGT 163059 |||| |||||||| ||||| || || || | |||| | |||||||| || | || ||| Sbjct 54976 CTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGA 54917 Query 163060 TAGCACCAGTGGACCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAG 163119 | ||| | || ||||||||||| ||| || | |||||||| ||||| | || | | Sbjct 54916 TGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTG 54857 Query 163120 GCAACGCTCT 163129 | |||||||| Sbjct 54856 GAAACGCTCT 54847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543968326301400