Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq7860 132 6e-26 seq4549 123 3e-23 seq862 114 2e-20 seq345864 87.8 2e-12 >seq7860 Length=10955 Score = 132 bits (146), Expect = 6e-26 Identities = 156/211 (74%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 102239 CAACACCAAACGAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACA 102298 |||||||||| |||||||||||||||| ||||| || || ||||| || | || | Sbjct 6481 CAACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAAGAATA 6540 Query 102299 CACTGACAAAAACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAA 102358 || ||||||||||| || || ||||||| || || ||||| || || || | | || Sbjct 6541 CAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAA 6600 Query 102359 TTAACCTAGCCAACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGA 102418 | | ||| | || |||||||| | ||||||||| || || |||| || ||||||| Sbjct 6601 CAGATCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCGTGGA 6660 Query 102419 GAGCCACAAAAGCCCAGAGTCCCCCAAGTTG 102449 |||| ||||||| ||| || || || | ||| Sbjct 6661 GAGCAACAAAAGTCCACAGACCGCCTAATTG 6691 >seq4549 Length=62305 Score = 123 bits (136), Expect = 3e-23 Identities = 203/292 (70%), Gaps = 3/292 (1%) Strand=Plus/Plus Query 101822 AGAACGTCTCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAG 101881 |||| ||||| || || ||||||| |||||| | ||| ||||| | | |||||||| | Sbjct 53187 AGAAAGTCTCAAATTCAGGATCTTATGCTGCACGGATTTCTTGAAAAATGAAGTCATAGG 53246 Query 101882 CACGAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAG 101941 |||| ||||| |||| ||||||| || || | | || | || | ||| | | | Sbjct 53247 CACGTAGGTTCAGAGGTAGACCAACTATTCCAAGAGCCCTCATTCATAAACCAGTTATTG 53306 Query 101942 GAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTT 102001 | ||||| | |||||||| || ||||| | |||| ||| |||| ||||||||| Sbjct 53307 GTACAAATAATATAAAGAAGTGTAACCAACATTTATCGGAAAAAGCAACCTCAAAGATTT 53366 Query 102002 GAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGA 102061 | ||||| || |||| || || |||||||||||||| | || |||| || | | Sbjct 53367 GGGACCAAAAGTGGTTAGCGGTGACCATTGAATAAGTTTATTTAGCTTGAGTTATGTTAA 53426 Query 102062 ATGCTTTGAAAGTGTTTG---CTTGATCACCATCTTCATACAGAGTGTTCTC 102110 | || ||| || |||| | | |||| |||||||| | | ||| || || Sbjct 53427 AAGCACGGAATGTATTTGCACCATCATCATCATCTTCAAATAAAGTATTTTC 53478 >seq862 Length=327473 Score = 114 bits (126), Expect = 2e-20 Identities = 150/208 (72%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 101944 ACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGA 102003 ||||| | |||||||||||| ||||| ||||| ||| | ||| ||||||||||| Sbjct 255342 ACAAAAAACATAAAGAAATGTAACCAATGTTTATTGGAAAAAGTAATCCCAAAGATTTGG 255283 Query 102004 GACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAAT 102063 ||||| || ||||| | || |||||||||||||| ||||| |||| || | | | Sbjct 255282 GACCAAAAGCGGTTAGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTAATA 255223 Query 102064 GCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCG 102123 || | ||| || ||||| ||||||||||||| | | ||| || || | || |||| Sbjct 255222 GCATGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTATGGTAGCACCA 255163 Query 102124 TGGATTGCTGACAGCAGTGCTCCTCCCA 102151 || || || | ||||| || | |||| Sbjct 255162 TGAATAGCACATAGCAGAGCAGCACCCA 255135 >seq345864 Length=152 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 102156 ACCTGCAACACCCATCATATGGAATGGGTTGAGCGTCCAGTTATGGAAGCCCTGTAGGAA 102215 ||| || ||||||||||||||||| ||||| || |||||||||||||| || || | || Sbjct 125 ACCAGCCACACCCATCATATGGAAAGGGTTTAGTGTCCAGTTATGGAAACCTTGGAAAAA 66 Query 102216 GAGTAGGAATCTAAATATCGCTGCAACACCAAACGAGGGCGCAAAGAACCAAC 102268 | | ||| | || || |||||||| ||||| || ||||| ||||||| Sbjct 65 CAAAATGAAACGGAAGATTGCTGCAACTCCAAAACTTGGAGCAAAAAACCAAC 13 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629143029268200