Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq54748 111 2e-19 seq31749 104 3e-17 seq7860 98.7 1e-15 seq2941 98.7 1e-15 seq31735 89.7 6e-13 >seq54748 Length=1350 Score = 111 bits (122), Expect = 2e-19 Identities = 177/254 (70%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 138162 AATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGT 138221 || || | ||| || | ||| |||||||||||||| || |||||||| ||||| || || Sbjct 333 AAAGGAGCGAGGTGCTCTGCGACACCAATAGGACCGACACCAGGACCACCACCACCGTGA 392 Query 138222 GGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCATAGTCACATGGT 138281 ||||||||||| ||||| || | || | ||| || ||||| |||||| |||| || Sbjct 393 GGAATACAGAAGGTCTTGTGAAGGTTCAAATGGCAGACATCGGCACCAATTTCACCAGGA 452 Query 138282 TTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTG 138341 ||||| | ||| || || | || ||||| || | || |||||||||||||| Sbjct 453 GAGCAAAGACCAATCTGAGCGTTCATGTTGGCACCGTCCATGTAGACCTGACCACCATTC 512 Query 138342 TCATGAACGATCTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGA 138401 | ||||| | | || || ||| || | |||||| ||||| ||| || Sbjct 513 TTGTGAACAAGATCGCAGGCCTCCTTGACCTTAGGTTCAAACACACCGAAAGTGCTAGGG 572 Query 138402 TATGTAATCATAAT 138415 ||||| ||||| || Sbjct 573 TATGTGATCATGAT 586 >seq31749 Length=37690 Score = 104 bits (114), Expect = 3e-17 Identities = 156/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 139298 CATATTTGCGAGCAGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAAT 139357 ||| ||||| | ||| || || || || |||||||| || || || ||||| | || Sbjct 11019 CATGTTTGCCAACAGGGCCTGGGCAGTACAGATGTTTGACGTAGCCTTCTCTCTCCGGAT 10960 Query 139358 ATGCTGCTCTCTAGTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTG- 139416 |||||||||||||| || || || | || ||| || || ||||| | |||| | || Sbjct 10959 GTGCTGCTCTCTAGTCTGCAGAGCAAGTCGGTAGGCTGGCTTGCCCT-GCTGATCTTTGC 10901 Query 139417 ACTGACCTACAATTCTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATG 139476 | |||| || | | ||| || ||||| | ||| |||||| | |||||||||| Sbjct 10900 TCAGACCGACGAGACGGCCCGGGATCTTGCGCTTGAGCTTGTCGGAGACAGCAAAGAATG 10841 Query 139477 CAGCATGAGGACCTCCGTATCCCATAGGAATACCAAACC 139515 |||| || || ||||||||||| ||||| ||||||| Sbjct 10840 CAGCGTGGGGTCCTCCGTATCCAGGAGGAACTCCAAACC 10802 >seq7860 Length=10955 Score = 98.7 bits (108), Expect = 1e-15 Identities = 146/207 (71%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 123434 GGTGCGAAGAACCAACTGTGCTGACCTAGTGGATAGATCAGAAAGATGCTAGTGAAGACT 123493 || || |||||||||| ||||||||||||||| |||| || | | || || Sbjct 6495 GGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAAGAATACAGAAACAAAAACA 6554 Query 123494 GCGATAACAGCAGAGAATGCGAGTGCGTTGTAAGGTCTAATGCCTACAAGTCCTGCGATC 123553 || || |||||||||||||| ||| || ||||||| | ||| || || | Sbjct 6555 GCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAATTGAACAGATCGAGCAAGT 6614 Query 123554 TCAAATTGTCTGAGCATGAAACCTATGAGTCCAAAGACTCCATGTAATGCTACAAAGTTC 123613 |||||||| | | |||||||||||| |||||||| | || || | || ||||| || Sbjct 6615 TCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCGTGGAGAGCAACAAAAGTC 6674 Query 123614 CATAGACCTCCGAGTTGTAACCAACGA 123640 || ||||| || | ||| |||||||| Sbjct 6675 CACAGACCGCCTAATTGACACCAACGA 6701 >seq2941 Length=104135 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||||| | ||||| |||||||||||||| | ||||||||| || |||||||| Sbjct 54200 AAATGGTGCTAAGTGTTTCTTCACACCAATAGGACCCATGCCAGGACCACCTCCTCCATG 54141 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 |||||| |||||||| ||||| | ||| ||||| || || || || ||| Sbjct 54140 TGGAATGCAGAATGTTTTATGGAGATTGAGATGGCAAACGTCCGCTCCA 54092 Score = 93.3 bits (102), Expect = 5e-14 Identities = 141/199 (71%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 139323 GTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGTGCT 139382 ||||| ||||| ||||| || ||||| |||| ||||||||||| || || || | || Sbjct 51341 GTGCAAATGTTGCTGGTAGCCTTGTCCCTTCGGATATGCTGCTCCCTTGTCTGCATAGCC 51282 Query 139383 AATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGCCAGGTA 139440 | | ||||| || ||| || |||| || ||| | ||||| || || | Sbjct 51281 ATACGCAGAGCAGGCTTCCCTGAAGAATCAACACTCAC--ACCAATGATTCTCCCTGGCA 51224 Query 139441 TCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCCCA 139500 || ||||||| |||| | | ||| || | ||| || |||||||| ||||| || |||| Sbjct 51223 TCATTCTCTTGTACTCCTGGGATGTGGCCAGGAACGCCGCATGAGGTCCTCCATACCCCA 51164 Query 139501 TAGGAATACCAAACCTTTG 139519 |||||| |||||||| || Sbjct 51163 TAGGAACCCCAAACCTCTG 51145 Score = 84.2 bits (92), Expect = 3e-11 Identities = 93/123 (76%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 138294 ACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGATC 138353 ||||||||||| | || || ||||| | ||||| ||||| ||||||||||||| ||| Sbjct 53680 ACCTGTGCATTCATGTTAGCCCCATCCATGTATACTTGACCTCCATTGTCATGAATTATC 53621 Query 138354 TTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATC-AT 138412 |||||||||| || | |||| | || ||||| || || |||||||||| | || Sbjct 53620 TTACATATCTCATCAATACCTTCTTCATAGACTCCATGGGTTGAAGGATATGTAACCTAT 53561 Query 138413 AAT 138415 ||| Sbjct 53560 AAT 53558 >seq31735 Length=860 Score = 89.7 bits (98), Expect = 6e-13 Identities = 132/187 (71%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| |||||||| || || || | ||||| | | ||||||||||| || | | || Sbjct 313 CATGGCCTCTGCAGCAGCGGTGGGCTCATCGAGGACAGATGCGTTTGAGATGGCCAGGCC 372 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || | | || ||| | |||| | | ||||||||||||||| || Sbjct 373 GGTCAGGTCAGATTCCATGGTCTGGAAGTTGAGCAGGGACTCCAATCTTCCCTGACTAAT 432 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 ||||| ||| || ||||||||| ||||||||| | ||| ||||| || || |||| || Sbjct 433 CTCAGGTTGGTATGGAGTGTAACTTGTGTACCAGCCAGGGTTCTCGAGGACATTTCTCTT 492 Query 140039 TATGACT 140045 |||||| Sbjct 493 AATGACT 499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 575003926225800