Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq7860 174 2e-38 seq862 113 6e-20 seq345864 111 2e-19 seq4549 104 3e-17 seq13424 91.5 2e-13 >seq7860 Length=10955 Score = 174 bits (192), Expect = 2e-38 Identities = 183/238 (77%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 23916 GCCGCAACACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGG 23975 ||| ||||||| ||||| ||||||||||||||| ||||| || | ||||| || | | Sbjct 6477 GCCCCAACACCAAAACTAGGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAAG 6536 Query 23976 AATACAGACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATT 24035 |||||||| || || |||||||| ||| |||| || || || ||||| || || || | | Sbjct 6537 AATACAGAAACAAAAACAGCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCAAT 6596 Query 24036 CCAATTAGA-CGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACC 24094 || ||| || || |||||||| ||||||||||| |||||||| ||| |||| || || Sbjct 6597 TGAA-CAGATCGAGCAAGTTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCC 6655 Query 24095 GTGGAGAGCAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCT 24152 ||||||||||||||| | ||| || || || | ||| ||| || ||| |||||| Sbjct 6656 GTGGAGAGCAACAAAAGTCCACAGACCGCCTAATTGACACCAACGAGTAAAATCCCCT 6713 >seq862 Length=327473 Score = 113 bits (124), Expect = 6e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 23625 ACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTTGT 23684 ||||| ||||||||||| || |||||| | |||||| ||| | || ||| |||||||| Sbjct 255342 ACAAAAAACATAAAGAAATGTAACCAATGTTTATTGGAAAAAGTAATCCCAAAGATTTGG 255283 Query 23685 GACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGAAC 23744 |||||||| || || | || ||||| ||||| || || || | ||||| | | | Sbjct 255282 GACCAAAAGCGGTTAGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTAATA 255223 Query 23745 GCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTCCA 23804 || | || || ||||| || ||||||||| | | ||||| || | ||| | ||| Sbjct 255222 GCATGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTATGGTAGCACCA 255163 Query 23805 TGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACC 23839 ||||||||| | || || || | |||| || ||| Sbjct 255162 TGAATAGCACATAGCAGAGCAGCACCCAATACACC 255128 >seq345864 Length=152 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23811 GCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGGGGTTGAGC 23870 ||| | ||||| || |||| | || |||||| || |||||||||||||| ||||| || Sbjct 151 GCACAAAGAAGAGCAGCTCCTAATACACCAGCCACACCCATCATATGGAAAGGGTTTAGT 92 Query 23871 GTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAACACCGAAA 23930 ||||||||||| || || |||| || | || ||| | ||| || || ||||| || ||| Sbjct 91 GTCCAGTTATGGAAACCTTGGAAAAACAAAATGAAACGGAAGATTGCTGCAACTCCAAAA 32 Query 23931 CTCGGCGCAAAGAACCAAGATGACTGTCC 23959 || || ||||| |||||| ||| || || Sbjct 31 CTTGGAGCAAAAAACCAACCTGATTGACC 3 >seq4549 Length=62305 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23503 AGAAGGTCTCATACGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 |||| |||||| | | ||||| || ||||| || |||||| | || ||||| | Sbjct 53187 AGAAAGTCTCAAATTCAGGATCTTATGCTGCACGGATTTCTTGAAAAATGAAGTCATAGG 53246 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 |||| || || |||| || |||| || |||| || | || | ||| | | | Sbjct 53247 CACGTAGGTTCAGAGGTAGACCAACTATTCCAAGAGCCCTCATTCATAAACCAGTTATTG 53306 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 | ||||| || ||||||||||| ||||||| |||| | ||| |||||| | ||||||| Sbjct 53307 GTACAAATAATATAAAGAAGTGTAACCAACATTTATCGGAAAAAGCAACCTCAAAGATTT 53366 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGT 23719 | |||||||| | || || || ||||| ||||| || Sbjct 53367 GGGACCAAAAGTGGTTAGCGGTGACCATTGAATAAGT 53403 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 26905 GCGGTGAACCAGATGCCAACAACGGGCCATGCAGCAAGGAAGAAGTGCAAGGAACGTGAG 26964 |||||||||||||| || || || ||||| || || |||||||| || || ||||| || Sbjct 6244 GCGGTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGAAGAAATGTAAAGAACGAGAA 6303 Query 26965 TTGTTGAATGAAGCATATTGGAAGATCAAACGACC 26999 || ||||| |||||||||||||||||| || || Sbjct 6304 TTATTGAAACTAGCATATTGGAAGATCAATCGGCC 6338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 660903195727800