Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq524375 140 4e-28 seq862 132 5e-26 seq7860 111 2e-19 seq4549 107 2e-18 seq5622 98.7 1e-15 seq345864 91.5 2e-13 seq13424 86.0 7e-12 >seq524375 Length=364 Score = 140 bits (154), Expect = 4e-28 Identities = 133/170 (78%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||||||||||||||||||||| | ||||| || || |||||||||||||| || Sbjct 195 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 254 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 ||||| || || || ||| | ||||| | || || | ||||||||||||||||| Sbjct 255 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCC 314 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGT 165937 |||||||||||||| || |||||||| || || |||| ||| || ||| Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTTGCTGT 364 >seq862 Length=327473 Score = 132 bits (146), Expect = 5e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 167585 TGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 167644 |||||| ||| |||| | ||| || ||||||| ||| |||| |||||||| | ||||| Sbjct 255135 TGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAG 255194 Query 167645 ATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATT 167704 ||||||| ||||| || || | || | | | ||||| | ||||| ||||||| Sbjct 255195 ATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATT 255254 Query 167705 CAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAAC 167764 ||||||| || | ||||| || ||||| || ||||| || ||| |||| ||| |||| Sbjct 255255 CAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAAC 255314 Query 167765 GCTGGCTTCATTTCTTTATGTTATTCGT 167792 ||| | |||||||||||||| || || Sbjct 255315 ATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq7860 Length=10955 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 167287 CAACTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTC 167346 ||| | || || || ||| ||||||| || |||||||| || |||| || || |||||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 167347 ATGCTTCGACAGTTTGAACTTGCTCG-CCTGATTGGTATCCGTCCCTACAATGCTATTGC 167405 ||| | || || |||||||||||||| ||| || | || || || ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAATTGCGACCTTATAATGCAATCGC 6573 Query 167406 TTTCTCTGGTCCTATTGCTGTCTTCGTTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAG 167465 ||||||| ||| |||||||| || ||| || ||| | | ||||| || ||||| Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 167466 CAGCTGGTTCTTTGCCCC 167483 | ||||||||||| || Sbjct 6512 TGGTTGGTTCTTTGCGCC 6495 >seq4549 Length=62305 Score = 107 bits (118), Expect = 2e-18 Identities = 203/298 (68%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 167620 ACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAG---CAAACACTTTTAAGGCATTC 167676 ||| |||| |||||||| | |||||||| ||| | | |||| || || || || Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 167677 GATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGTCTCAG 167736 | ||||| | || | |||||||||||||| || || |||| || ||||| || Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 167737 ATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCGTTCCC 167796 ||||| | ||||||| | | ||| | ||| | || |||||||| ||||| || || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 167797 GTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTCGTGCT 167856 | | || | || | | |||| || ||||||| |||| || || ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 167857 TACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTTTCT 167914 || || ||| ||| |||||| ||| | || || | ||||| || ||||| ||||||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq5622 Length=97820 Score = 98.7 bits (108), Expect = 1e-15 Identities = 101/132 (77%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 167899 GAGTTTGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTA 167958 || ||||| |||||||| || ||||| | ||| | ||||||||| || | || ||| | Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 167959 GCACCTATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGC 168018 ||| || |||||||||||||| ||| || | ||||| ||||| ||||| || || || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 168019 AACGCACTATAA 168030 ||||| || ||| Sbjct 54854 AACGCTCTTTAA 54843 >seq345864 Length=152 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 167470 TGGTTCTTTGCCCCGTCCTTCGGAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAA 167529 ||||| ||||| || || ||||| || || |||||||| ||| | | || ||||| Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 167530 GGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGT 167589 || ||||| ||||||||||| || || || |||||||||||||| || ||| | | || Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGGA 134 Query 167590 GGTGCATTGCTTTCTGCA 167607 | ||| | |||| |||| Sbjct 135 GCTGCTCTTCTTTGTGCA 152 >seq13424 Length=38927 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 166486 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTT 166545 || || |||||||||||||| ||| ||||| || || || || || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 166546 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 166580 || || |||||||| || || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557375985126000