Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq524375 100 8e-17 seq13424 82.4 2e-11 >seq524375 Length=364 Score = 100 bits (110), Expect = 8e-17 Identities = 111/148 (75%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 42310 ACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCT 42369 ||| | ||||| ||||| | || ||||||||||| || ||||| || || | || Sbjct 217 ACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACT 276 Query 42370 GCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATT 42429 || ||| || |||||| | || ||||| ||||| ||||| || ||||| ||||| || Sbjct 277 GCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATC 336 Query 42430 CGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||| ||||| ||||||||| | |||| Sbjct 337 CGTGAGCCTGTTTCTGGCTCTTTGCTGT 364 >seq13424 Length=38927 Score = 82.4 bits (90), Expect = 2e-11 Identities = 84/107 (79%), Gaps = 2/107 (2%) Strand=Plus/Minus Query 43015 ATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTTCTTTCTTGCCGCTTG 43073 |||||||||||||| | |||| |||||| ||| ||||| || ||||| || || ||||| Sbjct 6329 ATCTTCCAATATGC-TAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTG 6271 Query 43074 GCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTATGG 43120 ||| || || || || |||||||| || | || |||| ||||||| Sbjct 6270 GCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 142592087374420