Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq862 159 4e-34 seq524375 150 2e-31 seq7860 122 1e-22 seq345864 111 2e-19 seq13424 87.8 2e-12 seq104104 84.2 2e-11 >seq862 Length=327473 Score = 159 bits (176), Expect = 4e-34 Identities = 160/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 66825 ACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGA 66884 ||||| |||||||||||||| ||||| |||||| ||| | ||| |||||||| || Sbjct 255342 ACAAAAAACATAAAGAAATGTAACCAATGTTTATTGGAAAAAGTAATCCCAAAGATTTGG 255283 Query 66885 GACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAAT 66944 ||||| |||||||| | || |||||||| ||||||||||| ||||||| | || | Sbjct 255282 GACCAAAAGCGGTTAGTGGTGACCATTGAATAAGTTTCTTCAACTTGAGTTGGGTTAATA 255223 Query 66945 GCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCA 67004 || | ||| || ||||| |||||||||||| | | |||||| |||| ||| ||||| Sbjct 255222 GCATGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTATGGTAGCACCA 255163 Query 67005 TGAATGGCAGAAAGCAATGCACCACCCA 67032 ||||| ||| | |||| ||| |||||| Sbjct 255162 TGAATAGCACATAGCAGAGCAGCACCCA 255135 >seq524375 Length=364 Score = 150 bits (166), Expect = 2e-31 Identities = 137/170 (81%), Gaps = 2/170 (1%) Strand=Plus/Minus Query 68657 ACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGA 68716 |||| | || |||| |||||| ||||| |||||||||||||||||||| |||||||||| Sbjct 364 ACAGCAAAGAGCCAGAAACAGGCTCACGGATACCATCGATGTCCACAGGAGGAGCAGCGA 305 Query 68717 TGAAGGCGACGATGAA-ACAGATGGTTGCTGCAAGCAGCGTAGGGATCATCAGGACGCCG 68775 ||||||| | || || || || |||||| | | || ||||||||||| || || || Sbjct 304 TGAAGGCAATAATAAACACGGA-GGTTGCAGTCAATAGGGTAGGGATCATTAGAACACCA 246 Query 68776 AACCAACCAACGTAAAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 |||||||| | |||||||||||| || ||| || |||||||||||||| Sbjct 245 AACCAACCGATGTAAAGGCGGTTTTCAGTGCTGGTAACCCATTCGCAGAA 196 >seq7860 Length=10955 Score = 122 bits (134), Expect = 1e-22 Identities = 160/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 67134 GGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAACAAAAACA 67193 || || || ||||||| || ||||| || || || || | || ||| |||||||||| Sbjct 6495 GGCGCAAAGAACCAACCAGACTGACCTAGTGGATAAATCAAGAATACAGAAACAAAAACA 6554 Query 67194 GCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA-CGTGCCAG 67252 || || ||| ||||||| || || ||||| || || || | | || ||| || || || Sbjct 6555 GCAATTGGAGCAGAGAATGCGATTGCATTATAAGGTCGCA-ATTGAACAGATCGAGCAAG 6613 Query 67253 TTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCCACAAAATT 67312 |||||| || || | ||||||||| ||||| | ||||| |||||||| || |||||| | Sbjct 6614 TTCAAATTGACGTAACATGAAACCTATTAGTCCAAAAGCGCCGTGGAGAGCAACAAAAGT 6673 Query 67313 CCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCC 67351 ||| || || || | ||| ||| || |||||||| Sbjct 6674 CCACAGACCGCCTAATTGACACCAACGAGTAAAATCCCC 6712 >seq345864 Length=152 Score = 111 bits (122), Expect = 2e-19 Identities = 114/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 67011 GCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGTTCAAG 67070 ||| |||| | ||| | || | | ||| || |||||||||||||| || ||||| | Sbjct 151 GCACAAAGAAGAGCAGCTCCTAATACACCAGCCACACCCATCATATGGAAAGGGTTTAGT 92 Query 67071 GTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCCCGAAA 67130 |||||||||||||| ||||| | || | || ||| || |||||||||| || || ||| Sbjct 91 GTCCAGTTATGGAAACCTTGGAAAAACAAAATGAAACGGAAGATTGCTGCAACTCCAAAA 32 Query 67131 GATGGAGCGAAAAACCAACTCGATTGACC 67159 |||||| |||||||||| |||||||| Sbjct 31 CTTGGAGCAAAAAACCAACCTGATTGACC 3 >seq13424 Length=38927 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 67994 CCATGGTGCTAACACCAAGTGCAGTGAACCAGATACCAACGACAGGCCATGCAGCAAGGA 68053 |||| ||||| | ||| | || |||||||||||||| || |||||||| || || |||| Sbjct 6224 CCATAGTGCTGATACCTAAAGCGGTGAACCAGATACCTACTACAGGCCAAGCCGCTAGGA 6283 Query 68054 AGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCA 68101 |||| || | ||||| || || ||||| ||||| |||||||||| Sbjct 6284 AGAAATGTAAAGAACGAGAATTATTGAAACTAGCATATTGGAAGATCA 6331 >seq104104 Length=106 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 66867 GCAATACCAAAGATCTGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCC 66926 |||| |||||||| || ||||| |||||||| ||||| |||||||| ||||||||||| Sbjct 106 GCAACCCCAAAGATTTGGGACCAAAAGCGGTTAGCAGTGACCATTGAATAAGTTTCTTCA 47 Query 66927 TCTTGAGTAGAGTCGAATGCTTTGAAAGTGTTTGCTTGTTCACCAT 66972 ||||||| | || || || ||| || ||||| ||||||| Sbjct 46 GCTTGAGTTGCGTTAAAAGCACGGAATGTATTTGCACCATCACCAT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568107832447800