Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq538179 118 2e-21 seq2836 118 2e-21 seq23076 93.3 8e-14 >seq538179 Length=533 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||||||||| || ||||||||||| || | ||| || ||| || |||||| Sbjct 365 ATCCCTCCTCTCAATCGGAGGACCAGATGCAAAGTCGACTCCTTCTGAATGTTGTAGTCG 306 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||| | | || || ||||| || ||||| || || | ||||| || || ||| Sbjct 305 GCGAGCGTGCGACCGTCCTCCAATTGCTTCCCGGCGAAGATGAGCCTCTGCTGGTCCGGA 246 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || || | || | || ||| |||||||| ||| Sbjct 245 GGAATTCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATCGTATCGGAGCTCTCT 186 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || | ||||| || || || ||||| ||||| || || || ||||| Sbjct 185 ACCTCCAAGGTTATCGTCTTCCCGGTTAGAGTTTTGACGAAGATCTGCAT 136 >seq2836 Length=35635 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| || | || || ||||| || | ||||| ||| || ||| || || ||| Sbjct 32425 ATACCACCCCTGAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCG 32484 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || |||| ||| || | || ||||| || ||||||| ||||| ||||| || Sbjct 32485 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATTAGCCTCTGCTGATCTGGG 32544 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || ||||| | || | ||| || ||||| || |||| Sbjct 32545 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACATTATCTATGGTATCAGAGCTCTCA 32604 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| ||||| || || || || || || ||||| || ||||| Sbjct 32605 ACCTCAAGAGTAATAGTCTTTCCAGTGAGTGTCTTGACAAAAATCTGCAT 32654 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| ||||| |||| || | || | ||||| || || || || Sbjct 32653 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 32712 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | ||| || || |||||||| ||||| || | ||||| || || ||| Sbjct 32713 GCCAAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGA 32772 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||| || || || || ||||||| ||| | ||| ||| ||||| || ||| Sbjct 32773 GGGATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCTCG 32832 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || |||||||| || || || || || ||||| ||||| || ||||| Sbjct 32833 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 32882 >seq23076 Length=20243 Score = 93.3 bits (102), Expect = 8e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | || || || || || || | || | ||| || ||| || |||||||| Sbjct 11921 ACCACCACGCAGACGGAGAACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 11862 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 | |||| | || || | || || || ||||| || |||| ||| || |||||||| Sbjct 11861 GAGGGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 11802 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 || || || || || || || || | || | ||| || || ||||||||||| || Sbjct 11801 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCGAC 11742 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || ||||| || || || || || ||||| || || || || |||||| Sbjct 11741 CTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTGCATT 11693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 893447740522800