Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq12300 125 1e-23 >seq12300 Length=44855 Score = 125 bits (138), Expect = 1e-23 Identities = 161/220 (73%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| |||| || |||||||||||||| ||||| || || || || ||| Sbjct 13060 ATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTCC 13001 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || || ||| || ||||| ||||| || || || || || || Sbjct 13000 GATACCATTGACAATGTTAAGGCTAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 12941 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| ||||||||| | |||||| || || ||| | ||||| | Sbjct 12940 CAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACA-- 12883 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTGTTAAGATT 156040 | ||||||| ||| |||| || ||||| ||| | |||| Sbjct 12882 ACATCCAAAAGGAGTCGACCCTGCATTTGGTGCTGCGATT 12843 Score = 109 bits (120), Expect = 8e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || ||||| || |||||||| || || ||||| ||| || Sbjct 13289 AATGCAAATTTTTGTGAAGACCTTGACCGGCAAAACTATCACTTTGGAAGTTGAAAGCTC 13230 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||||| ||| || || || || || |||||||| || || || || || || || Sbjct 13229 TGATACCATTGATAATGTTAAGGCAAAGATCCAAGATAAGGAGGGTATCCCCCCGGACCA 13170 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || ||||||| ||| || ||||| || |||||| || ||| || | |||||||| Sbjct 13169 GCAGAGGTTGATTTTTGCTGGGAAGCAACTAGAAGATGGAAGGACTCTAGCTGATTATAA 13110 Query 156002 TAT 156004 ||| Sbjct 13109 TAT 13107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 726822860814000