Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq12300 116 7e-21 seq2836 113 9e-20 seq23076 100 6e-16 seq1569 95.1 2e-14 seq2580 89.7 1e-12 seq5878 87.8 4e-12 seq25376 84.2 4e-11 >seq12300 Length=44855 Score = 116 bits (128), Expect = 7e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 192328 ACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCC 192387 || ||||| | || | ||| || ||| || ||||| | ||| || | | |||| ||| Sbjct 12852 ACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCGGCTAAGGTCCTTCCATCTTCC 12911 Query 192388 AATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGT 192447 || || ||||||||||| || || ||||| || || || || || || ||||| ||||| Sbjct 12912 AACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGGGGAATACCCTCTTTGTCTTGG 12971 Query 192448 ATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTA 192507 || ||| || ||||| || | ||| || || || || | |||||||||||| Sbjct 12972 ATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCAACCTCCAAAGTAATGGTTTTT 13031 Query 192508 CCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| || || |||| |||||||||||| Sbjct 13032 CCAGTCAAGGTCTTAACAAATATCTGCAT 13060 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| || || | || || || | || | || || ||| ||||| || Sbjct 13515 ATACCACCTCGGAGGCGGAGCACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCG 13574 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | ||| ||||||||||||||||| ||||| || || ||| Sbjct 13575 GCCAAAGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGT 13634 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | || || ||| Sbjct 13635 GGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATCGTGTCGGAGCTTTCC 13694 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || |||| |||||||||||| Sbjct 13695 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAATATCTGCAT 13744 Score = 96.9 bits (106), Expect = 7e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || || || || || | ||| || |||||||||||| Sbjct 13059 ATCCCACCACGGAGTCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCA 13118 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || | | |||| || | ||| || |||||||| || || ||||| || || || Sbjct 13119 GCTAGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGG 13178 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || |||||||| || || || |||||| || | ||| || ||| Sbjct 13179 GGGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTATCAATGGTATCAGAGCTTTCA 13238 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||| | ||| || ||||| || || || || || | ||| || |||||| Sbjct 13239 ACTTCCAAAGTGATAGTTTTGCCGGTCAAGGTCTTCACAAAAATTTGCATT 13289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || || || | || | || || ||| || ||||| Sbjct 13287 ATTCCACCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCG 13346 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | ||| || ||||||||||| || ||||| ||||| ||| Sbjct 13347 GCAAGGGTTCGACCATCTTCGAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGT 13406 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || || || |||||| || | || || || Sbjct 13407 GGGATACCCTCCTTATCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCA 13466 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | || |||||||| || || | ||||| | ||| || ||||| Sbjct 13467 ACTTCCAAGGTTATGGTTTTCCCGGTAAGGGTTTTGACAAAGATTTGCAT 13516 >seq2836 Length=35635 Score = 113 bits (124), Expect = 9e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||| | || || || | || | ||||| ||| || |||||| Sbjct 32653 ATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATGTTGTAATCA 32712 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| ||||| ||||| ||||||||||| | ||||| || || || Sbjct 32713 GCCAAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGCTGGTCTGGA 32772 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || || || ||||| ||| |||||| || | ||| || || Sbjct 32773 GGGATTCCCTCCTTGTCCTGAATTTTGGCTTTGACATTATCAATTGTATCAGAGCTCTCG 32832 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | ||||| | ||| |||||||| Sbjct 32833 ACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTGCAT 32882 Score = 104 bits (114), Expect = 5e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| || || || | || | || | |||| ||| || || || ||||| Sbjct 32425 ATACCACCCCTGAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCG 32484 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| || | || || ||||| || |||| ||||| ||||| || Sbjct 32485 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATTAGCCTCTGCTGATCTGGG 32544 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||||||||| || || ||||| || |||||| ||| | ||| || || Sbjct 32545 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACATTATCTATGGTATCAGAGCTCTCA 32604 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| || || ||||| | ||| || | ||| |||||||| Sbjct 32605 ACCTCAAGAGTAATAGTCTTTCCAGTGAGTGTCTTGACAAAAATCTGCAT 32654 >seq23076 Length=20243 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||||| ||||| | || | || || || ||| || ||| || ||||| Sbjct 11467 ATACCACCTCGCAGACGGAGAACGAGGTGCAAGGTGCTCTCCTTCTGGATGTTGTAATCC 11408 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || ||| | || |||| || || ||||||||||| | || || ||||| ||| Sbjct 11407 GACAGGGTACGTCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCGTTGCTGATCGGGT 11348 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || ||||| || || ||| || || || || | || || || ||| Sbjct 11347 GGGATACCCTCCTTATCCTGGATCTTAGCCTTCACGTTGTCGATGGTGTCCGAGGACTCT 11288 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||||||||| || || || | || || | ||| |||||||| Sbjct 11287 ACTTCCAGAGTAATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCAT 11238 Score = 84.2 bits (92), Expect = 4e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | ||| | ||| || || || || || || Sbjct 11921 ACCACCACGCAGACGGAGAACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 11862 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | ||||| | || || | || |||||||||||||| |||| ||| || ||||| || Sbjct 11861 GAGGGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 11802 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || ||| || ||||| || | || || || || || Sbjct 11801 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGTGTCGGAAGACTCGAC 11742 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || ||||||||||| || || || | || |||| || ||||||||| Sbjct 11741 CTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTGCATT 11693 >seq1569 Length=35519 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| ||||| | || || || | || | || || ||| ||||| || Sbjct 33866 ATTCCACCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTATAGTCG 33925 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || ||||| |||| |||||||||||| |||| || || ||| Sbjct 33926 GCCAAAGTGCGACCGTCCTCAAATTGCTTACTAGCAAAGATTAACTTCTGCTGGTCTGGT 33985 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || ||||| || || ||| ||||| || | || || ||| Sbjct 33986 GGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATCGTGTCGGAGCTTTCC 34045 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | || |||| |||||||||||| Sbjct 34046 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAATATCTGCAT 34095 >seq2580 Length=28588 Score = 89.7 bits (98), Expect = 1e-12 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 49845 CCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTT 49904 |||||||| | || || | |||||| || || || || |||||||| |||| |||| Sbjct 12043 CCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAGCCAGGCATTAACCCTCGCTTT 11984 Query 49905 TTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAATATACCCTCGACACACGCAAA 49963 || |||||||||||||| ||| ||||| | || ||||| || |||||||| ||||| || Sbjct 11983 TTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAAGATCCCCTCGACGCACGCGAA 11925 Query 49964 TGC 49966 || Sbjct 11924 GGC 11922 >seq5878 Length=10836 Score = 87.8 bits (96), Expect = 4e-12 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||||| |||||| | || || || | || | || || ||| |||||||| Sbjct 9205 ATTCCACCTCGAAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTATAATCG 9146 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || | || || | ||| |||| |||||||||||| ||||||| | ||| Sbjct 9145 GCCAAAGTGCGACCGTCCTCAAGTTGCTTACTAGCAAAGATTAACTTCTGTTGGTATGGT 9086 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTAT--AGAATCTGACGATT 192484 || || || || || ||||| || || ||||||||| || | | | || || Sbjct 9085 GGGATGCCCTCCTTGTCTTGAATCTTGGCTTTTACATTGTCAATCGTGTAGCGGAGCTTT 9026 Query 192485 CTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 | || | || || ||||| || ||||| | || |||| |||||||| ||| || Sbjct 9025 CCACCCCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAATATCTACATCTT 8971 >seq25376 Length=12287 Score = 84.2 bits (92), Expect = 4e-11 Identities = 94/123 (76%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 49845 CCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAATCCTGGCATTAATCCTCTCTTT 49904 |||||||| | || || | |||||| || || || || |||||||| |||| |||| Sbjct 9922 CCCTCGTCTCGCGAGATCAGTTCATTGGAGAACGTCAAGCCAGGCATTAACCCTCGCTTT 9863 Query 49905 TTAAGCCAAAATATTGATGCA-AAACTACTAGAAAAGAATATACCCTCGACACACGCAAA 49963 || |||||||||||||| ||| ||||| | || ||||| || |||||||| || || || Sbjct 9862 TTTAGCCAAAATATTGA-GCAGAAACTCCCCGAGAAGAAGATCCCCTCGACGCAAGCGAA 9804 Query 49964 TGC 49966 || Sbjct 9803 GGC 9801 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 977518337360250