Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq12300 113 8e-20 seq2836 104 4e-17 seq1569 95.1 2e-14 seq23076 93.3 8e-14 >seq12300 Length=44855 Score = 113 bits (124), Expect = 8e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | | ||| | || ||||| | || | ||| || || || ||||| Sbjct 12831 ATTCCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATGTTGTAATCG 12890 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | ||| | | | | || ||||| || |||||||||||||| || ||||| ||||| || Sbjct 12891 GCTAAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGCTGGTCCGGG 12950 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || ||||| ||||| || ||| || ||||| || ||||| || || Sbjct 12951 GGAATACCCTCTTTGTCTTGGATCTTAGCCTTAACATTGTCAATGGTATCGGAACTCTCA 13010 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || | |||||||||||| ||||| || || |||| ||||||||||| Sbjct 13011 ACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||||| | || || || || || | ||| || |||||||||||| Sbjct 13059 ATCCCACCACGGAGTCGAAGCACCAAGTGCAAGGTGGACTCCTTCTGAATATTATAATCA 13118 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | || || | | | || || | ||| || ||||||||||| || ||||| ||||| || Sbjct 13119 GCTAGAGTCCTTCCATCTTCTAGTTGCTTCCCAGCAAAAATCAACCTCTGCTGGTCCGGG 13178 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || |||||||| || || || |||||| || ||||| || ||| Sbjct 13179 GGGATACCCTCCTTATCTTGGATCTTTGCCTTAACATTATCAATGGTATCAGAGCTTTCA 13238 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070 ||||| | ||| || ||||| || || || || || | || || |||||| Sbjct 13239 ACTTCCAAAGTGATAGTTTTGCCGGTCAAGGTCTTCACAAAAATTTGCATT 13289 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||||| || || | || || || | || | || || || ||||| || Sbjct 13515 ATACCACCTCGGAGGCGGAGCACCAAGTGAAGGGTTGATTCCTTTTGGATGTTATAGTCG 13574 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || | || || | ||| ||||||||||| ||||| ||||| ||||| ||| Sbjct 13575 GCCAAAGTGCGACCATCCTCAAGTTGCTTACCAGCAAAGATTAACCTCTGCTGGTCTGGT 13634 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || ||| ||||| || || || || ||| Sbjct 13635 GGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATCGTGTCGGAGCTTTCC 13694 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || || ||||| || ||||| | || |||| ||||||||||| Sbjct 13695 ACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAATATCTGCAT 13744 >seq2836 Length=35635 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| || || || | || | || | |||| ||| || ||| || ||||| Sbjct 32425 ATACCACCCCTGAGGCGGAGAACCAGGTGGAGTGTAGACTCCTTCTGAATGTTGTAATCG 32484 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| ||| | || || | || || ||||| ||||||| ||||| || || || Sbjct 32485 GCCAAAGTTCGGCCATCCTCAAGCTGCTTTCCAGCGAAAATTAGCCTCTGCTGATCTGGG 32544 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || ||||||||||| || || ||||| || |||||| ||| ||||| || || Sbjct 32545 GGAATTCCTTCTTTGTCCTGAATTTTTGCCTTCACATTATCTATGGTATCAGAGCTCTCA 32604 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || |||||||| || || ||||| | ||| || | || |||||||| Sbjct 32605 ACCTCAAGAGTAATAGTCTTTCCAGTGAGTGTCTTGACAAAAATCTGCAT 32654 >seq1569 Length=35519 Score = 95.1 bits (104), Expect = 2e-14 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 171888 ATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTC 171947 || ||||| || | |||| || |||| || ||||| |||| |||||| ||||| || Sbjct 33914 ATGTTATAGTCGGCCAAAGTGCGACCGTCCTCAAATTGCTTACTAGCAAAGATTAACTTC 33973 Query 171948 TGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTA 172007 || ||||| ||||| || || || || ||||| || || ||| ||||| || || Sbjct 33974 TGCTGGTCTGGTGGGATGCCCTCCTTGTCTTGAATCTTGGCTTTCACATTGTCAATCGTG 34033 Query 172008 TCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGC 172067 || || ||| || || || || ||||| || ||||| | || |||| ||||||||| Sbjct 34034 TCGGAGCTTTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGAGTCTTAACAAATATCTGC 34093 Query 172068 AT 172069 || Sbjct 34094 AT 34095 >seq23076 Length=20243 Score = 93.3 bits (102), Expect = 8e-14 Identities = 131/184 (71%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 171887 AATATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCT 171946 ||| || || || || | | ||| |||| || | || ||||||||||| || |||| Sbjct 11876 AATGTTGTAGTCGGAGAGGGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCG 11817 Query 171947 CTGTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGT 172006 ||| |||||||| || || || || || || || || ||| || ||||| || || Sbjct 11816 CTGCTGGTCAGGAGGAATGCCCTCCTTGTCCTGAATCTTAGCCTTGACATTGTCGATGGT 11757 Query 172007 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTG 172066 || || || || || || ||||||||||| || || || | || |||| ||| ||||| Sbjct 11756 GTCGGAAGACTCGACCTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTG 11697 Query 172067 CATT 172070 |||| Sbjct 11696 CATT 11693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 898891523307000