Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq495 129 2e-24 seq10479 116 1e-20 seq29272 114 4e-20 seq33909 109 2e-18 seq10521 100 8e-16 seq65591 93.3 1e-13 seq48264 91.5 4e-13 seq4218 84.2 6e-11 seq1154 84.2 6e-11 >seq495 Length=19699 Score = 129 bits (142), Expect = 2e-24 Identities = 238/343 (69%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||| | ||||||| |||||| | |||||| ||||||||| ||| | | || | Sbjct 10065 ATTGCGTACGGTCCCATCATATTTGACCATAATATCTTCCATAGCCTTCACAAGTCGCCT 10006 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 || || || || ||| ||| || || || || |||||||| ||||| | | |||||| Sbjct 10005 TTGGATGTACCCCGTTTCAGAAGTCTTCACTGCAGTATCAATAAGACCTTCCCTACCACC 9946 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||| ||||| || || | ||||| || || || | | | | ||| |||| || || Sbjct 9945 CATGGCATGAAAAAAGAACTCTTGTGGGGTCAGTCCACGTAGATATGAGTTCTCCAC-AA 9887 Query 302718 ACCACGCGCCT--CGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGT-TCTC 302774 ||| ||| || | ||| || || ||||| || || |||| ||||||| | | Sbjct 9886 ACC-CGCAACTTTCTGGCCCATAATCATTTTTGGTGAAATGGGGCAACGTCCTGTCTATG 9828 Query 302775 ATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTG 302834 | | ||||||||||| ||||| || ||||| |||||||| |||| || | | ||||||| Sbjct 9827 A-ACCCGTATGGGATTCGCTTACCCTCAACATTCTGCTGCCCCACACAAGCAGTCATCTG 9769 Query 302835 CGAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 || || || | ||| || ||||| || ||| | |||||| Sbjct 9768 TGATATGTTGATGAAACTACCTTTGGATCCTGCAGTAACCATA 9726 >seq10479 Length=44926 Score = 116 bits (128), Expect = 1e-20 Identities = 217/316 (69%), Gaps = 2/316 (1%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| |||||||| || ||||| |||| | || |||| | || || || | Sbjct 41256 ACCAATTGCATCAATCTCATCAATAAAAACTATACTGGGAGCACACTGCCTTGCTTCTTG 41197 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 ||| || | ||| || | ||| | ||||| ||||||| |||| || | || || ||| | Sbjct 41196 AAACAAGTTTCTGACCCTGGACGGTCCAACACCAACAAACATCTCCATGAAGTCTGAACC 41137 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 |||| | ||| ||| | ||| | || ||||| ||| | || ||||| |||| Sbjct 41136 AGATA-TGGAAAGAAAAGGGACACCAGACTCTCCTGCAGTTGCTTTTGCTAGAAGGGTCT 41078 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACT 289267 | || || || || || || | || ||| | || ||||||| ||||| || | || Sbjct 41077 TTCCCGTGCCTGGAGGGCCTACCAAAAGAGCACCTTTTGGTATCTTTGCTCCCAAATCCT 41018 Query 289268 TATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTCAT 289327 |||||||| |||| |||||| || | |||| |||| || ||| | |||||||||| Sbjct 41017 CATATTTCTTAGGGTTCTTTAGGAAGTGCACAAATTCCATAATTTCTTGCTTTGCCTCAT 40958 Query 289328 CACATCCTGCTACATC 289343 |||| || || ||||| Sbjct 40957 CACAACCAGCAACATC 40942 >seq29272 Length=119828 Score = 114 bits (126), Expect = 4e-20 Identities = 266/401 (66%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 302476 TCAACCTTGATTGGGTCAATTCCGTCATCGCCGTAGGAATACTGAATGATTTTGTTCTTG 302535 || |||||| | |||||| || || || ||||| | ||||||||| |||| | Sbjct 83744 TCGACCTTGGCTCCGTCAATGCCATCCTCTCCGTAAGCGAACTGAATGACGCTGTTGGTC 83685 Query 302536 TTATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGA 302595 || || || ||| || || | ||||| | |||||||| ||||| | |||| Sbjct 83684 GAGTTCCTCACAGTCCCGTCGTAGCAGATCATCACGTCTTCCAAGGCCTTGACCAGACGA 83625 Query 302596 CGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCA 302655 ||||| || ||||| || | || || || || || || || | || | | ||| Sbjct 83624 CGCTGGATGTAACCTGTCTCTGCCGTCTTGACGGCAGTGTCGATCAATCCTTCTCTACCT 83565 Query 302656 CCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACG 302715 |||| || |||||||| | ||||| |||| | |||| | | | ||| |||||||| Sbjct 83564 GCCATCGCGTGGAAGAAGAACTCTTGCGGTGTCAAGCCCCGGAGATACGAGTTCTCAACG 83505 Query 302716 AAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCA 302775 ||||| || |||||| | ||| ||| | |||||| ||||| || | | | Sbjct 83504 AAACCTCGGCTCTCGGGAGTGAAGTCATCCTTCGCAAAGTGGGGCAGTGTGCGATGCCTG 83445 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | ||| | || ||||||||||| || || |||||||||| | || | | |||||| Sbjct 83444 AATCCGAACGGAATACGCTTTCCTTCTACACTCTGCTGTCCGACACATGCAGACATCTGA 83385 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCAT 302876 || || || | | ||||| || |||||| | ||||| Sbjct 83384 GAGATGTTGATGAAAGATCCCTTCGATCCAGCAATGACCAT 83344 >seq33909 Length=74095 Score = 109 bits (120), Expect = 2e-18 Identities = 222/322 (69%), Gaps = 16/322 (5%) Strand=Plus/Minus Query 302553 ATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGT 302612 |||||| | ||||| | ||| |||||| |||| || ||| | |||||||| || || Sbjct 70180 ATCATAGCAGATCATCACGTCCTCCATAGCTTTGACTAGACGTCTTTGAATATATCCCGT 70121 Query 302613 TGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAA 302672 | || ||||||||||||||||| || ||||| | || ||| ||| ||||||||||| Sbjct 70120 TTCAGCAGTTTTTACAGCTGTATCGATAAGACCCTCTCGCCCAGACATGGCATGGAAGAA 70061 Query 302673 TAGCTCTTCCGGTCGT--AGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCG 302730 | ||||| ||| ||| | || | ||| | ||| |||| || || || | || || Sbjct 70060 GAACTCTTGCGG-CGTCAAACCTCTCAA-GTACGAGTTCTCCACAAATCCTCCTGCTTCT 70003 Query 302731 GG---CGAATCGTCGAACTTG-GTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 || |||||| |||| | ||| || ||||| | || | | | | || | Sbjct 70002 GGTCCAAAATCGT----CTTGCGCAAAATGGGGCAGCGACCGATGCCGAAATCCAAAATT 69947 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATT--T 302844 |||||||||||| || ||||| ||||| |||| || |||||| || ||||| | Sbjct 69946 GATACGCTTTCCCTCCACGTTTTGCTGGCCCACACATCCTGACATCTGTGAGATATTGAT 69887 Query 302845 AAATCACTGCCCTTGGAGCCAG 302866 ||| || || ||||| |||| Sbjct 69886 GAATGAC--CCTTTGGATCCAG 69867 >seq10521 Length=132224 Score = 100 bits (110), Expect = 8e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 251437 CTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGATGCACCGTGTGAA 251496 ||||| || || || ||||| | | || ||||| |||| || | ||||||| || Sbjct 115519 CTGTAGGCGTCCGACGCGTCGAACATCCTCTCCTTGAGGAAGGCAGCTCCACCGTGCGAG 115578 Query 251497 ATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAGCCCTACCCTCG 251556 |||| ||||||||||||||| || ||||| || |||||||| || | | | |||||| Sbjct 115579 ATCAGACAATCACGCTCCATCTCTCCGAATCGCAGACCACCGTCCCTGGATCGACCCTCT 115638 Query 251557 GCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGCTATGTTGCTTATCATTT 251616 | |||||||| ||||| | || |||||| || || || ||| || | Sbjct 115639 ACGGGCTGACGCGTGAGGATCTGCACAGGACCTCGGGCACGCGAGTGGATCTTGTCGTCG 115698 Query 251617 ACCATATGCTTGAGACGCTGGTAGAATGCGGGACC 251651 ||||| ||||| || ||||||||| | | ||||| Sbjct 115699 ACCATGTGCTTCAGTCGCTGGTAGTAAGTAGGACC 115733 Score = 93.3 bits (102), Expect = 1e-13 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| |||||||| ||||| || || || ||||||||||||||||| ||| || | Sbjct 115925 CGATGGTCATACGCGACGGAATGGCGTGCGGGTTGATGATGATGTCGGGAGTCACACCCT 115984 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTTGTCCG 251961 || ||||| ||||| |||| || || ||| || | ||||| || |||||||| ||| Sbjct 115985 CAATGGTGAAAGGCATGTCCTCTT-GTCTATATGTGATACCAATGGTACCCTTTTGACCG 116043 Query 251962 TGACGAGAACTGAACTTATCACC 251984 || |||||| ||||| ||||| Sbjct 116044 TGTCGAGAAGCAAACTTGTCACC 116066 >seq65591 Length=6549 Score = 93.3 bits (102), Expect = 1e-13 Identities = 266/406 (66%), Gaps = 5/406 (1%) Strand=Plus/Minus Query 155969 CTCCTCATCGCCGTGATTCTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGG 156028 |||||| | |||||| ||||| || || || | ||| | | ||||| || || Sbjct 3793 CTCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAAGCGAAGACATCAGCGTGCCAAGG 3734 Query 156029 CTCCAGATACATAGCAAAACTACC---ATTCCTCTTGCCACCCTGATCTACATACCGAGC 156085 ||| || || ||||| || ||| | | | ||||||||||| || ||||| | || Sbjct 3733 CTCGAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCAACATATCTGGC 3674 Query 156086 AGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCC-GC 156144 ||| || |||||||||| ||||| |||| || ||| || || || || ||||| || || Sbjct 3673 AGTGTTGTTGAAGACACGGAGCATGGGAACAAGACCGTTCGAGGTACCGTTGGTACCAGC 3614 Query 156145 GAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATT 156204 | || | || |||| | |||| ||| | || ||||||||||| | | Sbjct 3613 G-ATGTAAGAGCCAGTGGCACGAATGCAGTGAGCGTTGAGACCAATACCACCAGCGTTCT 3555 Query 156205 TAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCA 156264 | || || ||||| ||| | || | | | ||||| ||||| |||||||| | || Sbjct 3554 TCGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCATCAATCGAATCATCCTTCA 3495 Query 156265 TTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAG 156324 | | || |||| ||| | ||||| | || || || ||| |||| || |||| Sbjct 3494 TGTCGATCAGGAAGCATGAAGCGAGCTGAGGCTGGGGAGTGCCGGCGCTGAACAGAGTAG 3435 Query 156325 GTGTTGCATGAATAAAATACTTATTAGACATATAATCGTATGTCTC 156370 | | || || | || ||||| ||||| | | |||||| || Sbjct 3434 GCGAGGCGTGGGTGAAGTACTTGAGCGACATCAAGTTGTATGTTTC 3389 >seq48264 Length=897 Score = 91.5 bits (100), Expect = 4e-13 Identities = 128/180 (71%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 251480 GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCAT 251539 |||| ||||||| | |||| ||||||||| |||||||| || ||||| |||||||| | Sbjct 443 GAGAAGCACCGTACGCGATCAGACAATCACGTTCCATTTCTCCCAAACGCAGACCACCTT 502 Query 251540 CGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCGGC 251599 || | | ||| || | || || || |||||| || | ||||||| ||| || Sbjct 503 GACGCGAACGACCTTCTGTGGGTTGGCGGGTGAGAATAGCGCGAGGACCGGTGGCACGAG 562 Query 251600 TATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || ||| || | |||||||||||||| ||||||| | ||||| ||||||| Sbjct 563 AGTGCATCTTGTCCTGCACCATATGCTTGAGTTTCTGGTAGTAGATAGGACCCATGAAGA 622 >seq4218 Length=97144 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Plus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| ||||| |||||||| || || | || ||||||| ||||||||| ||| Sbjct 91805 TGCAAATAGATCTCTCACACGGGAGGCCCCCATGCCGACATACAATTCTACAAACTCACT 91864 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || |||| || || | || | ||||| || || || ||| | || ||||| Sbjct 91865 AGCAGAACAACTT--ATAAAGGGCACTTCAGCTTCCCCAGCCACAGCCTTTGCTAGAAGA 91922 Query 289204 GTCTTACCTGTTCCAGG 289220 ||||||||||| ||||| Sbjct 91923 GTCTTACCTGTCCCAGG 91939 >seq1154 Length=93033 Score = 84.2 bits (92), Expect = 6e-11 Identities = 102/137 (74%), Gaps = 4/137 (3%) Strand=Plus/Minus Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 |||||||| ||||| |||||||| || || | || ||||||| ||||||||| ||| Sbjct 19072 TGCAAATAGATCTCTCACACGGGAGGCCCCCATGCCGACATACAATTCTACAAACTCACT 19013 Query 289146 AGCGGAT--ACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGT 289203 ||| || |||| || || | || | ||||| || || || ||| | || ||||| Sbjct 19012 AGCAGAACAACTT--ATAAAGGGCACTTCAGCTTCCCCAGCCACAGCCTTTGCTAGAAGA 18955 Query 289204 GTCTTACCTGTTCCAGG 289220 ||||||||||| ||||| Sbjct 18954 GTCTTACCTGTCCCAGG 18938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1461409772925355