Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq7860 131 2e-25 seq524375 114 1e-20 seq4549 111 2e-19 seq345864 107 2e-18 seq5622 100 3e-16 seq13424 91.5 2e-13 >seq7860 Length=10955 Score = 131 bits (144), Expect = 2e-25 Identities = 164/221 (74%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 159544 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGATTATGGAATTTTGTGGCACTCCACG 159603 |||||| ||| | || ||||| ||| | || || | |||| |||||| || ||||||| Sbjct 6713 AGGGGATTTTACT-CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 6655 Query 159604 GTGCCTTCGCCCTAATTGGTTTCATGCTCCGTCAGTTTGAACTGGCACG-TCTCATTGGT 159662 | || || | ||||| ||||||||| | ||||| |||||||| || || ||| | | Sbjct 6654 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 6595 Query 159663 ATCCGTCCTTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTC 159722 | || ||||| ||||| || || ||||||| ||| |||||||||||||| || ||| Sbjct 6594 -TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 6536 Query 159723 CTCATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCC 159763 | || || ||| | |||||||| ||||||| || || || Sbjct 6535 TTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq524375 Length=364 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 157740 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq4549 Length=62305 Score = 111 bits (122), Expect = 2e-19 Identities = 180/259 (69%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 159936 GCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTATGGTCACT 159995 |||||||| || || ||| | |||||||| | | ||||| || |||||||| Sbjct 53445 GCAAATACATTCCGTGCTTTTAACATAACTCAAGCTAAATAAACTTATTCAATGGTCACC 53386 Query 159996 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGTGGCTTCAT 160055 || |||| ||| ||||| || ||||| | |||| ||||| | || | ||| | || Sbjct 53385 GCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACAC 53326 Query 160056 TTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGC 160115 ||||| || || ||||| || | | ||| | || | || |||| || |||| Sbjct 53325 TTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGT 53266 Query 160116 CTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAGCAGAAGAT 160175 || |||| || || ||||| || || ||| | |||||| ||| | |||||| ||||| Sbjct 53265 CTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGAT 53206 Query 160176 CCAGAATTTGAGACCTTCT 160194 || ||||||||||| |||| Sbjct 53205 CCTGAATTTGAGACTTTCT 53187 >seq345864 Length=152 Score = 107 bits (118), Expect = 2e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 159738 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 159797 ||||| || |||||||||| ||||| ||||| || ||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 159798 TTGTTCCTTCAAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCT 159857 ||||| | ||||| || || |||||||| |||| || |||||||||||||| || ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 159858 GGTATACTAGGTGGAGCACTACTCAGTGC 159886 ||| || |||| | || || || |||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq5622 Length=97820 Score = 100 bits (110), Expect = 3e-16 Identities = 102/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 160179 GAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTACGTGCATGGTTG 160238 ||||||||||| |||||||||||||| | || || || ||||| | |||| ||| || Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 160239 GCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTATTGCCTAGAGGC 160298 ||| || |||||||| ||||||||| |||| ||||| || || || | || | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 160299 AACGCCCTTTAAT 160311 ||||| ||||||| Sbjct 54854 AACGCTCTTTAAT 54842 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 158297 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158356 || || |||||||||||||| ||| ||||| || || ||||| || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 158357 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 158391 || || |||||||| || || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544591199287800