Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq4549 158 1e-33 seq862 152 6e-32 seq524375 127 2e-24 seq345864 120 3e-22 seq7860 114 1e-20 seq5622 105 7e-18 seq13424 96.9 4e-15 >seq4549 Length=62305 Score = 158 bits (174), Expect = 1e-33 Identities = 214/298 (72%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 152965 ACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAG---CAAACACTTTCAAAGCTTTC 153021 ||| |||| |||||||| | | |||||| ||| | | |||| || ||| ||||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 153022 GACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAG 153081 ||| ||||||| || | || ||||| ||||| || ||||||| || |||||||| Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 153082 ATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTACCT 153141 || |||| |||||||| | ||||| | ||| | || |||||||| | |||||||| Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 153142 GTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCGTGCT 153201 | | ||| | || | || ||||||| ||||||| |||| || || ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 153202 TACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTTCT 153259 || || || | | |||||||||| | || || ||||||||||||||||||| |||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq862 Length=327473 Score = 152 bits (168), Expect = 6e-32 Identities = 164/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 152923 GGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTG 152982 ||| | ||||| | || |||| | ||| |||||||||| ||| |||| |||||||| Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 152983 TATCAAGATGGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAG 153042 | | |||||||||| ||||| || ||| | ||| | || ||||||| ||||| Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 153043 ACCTATTCGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGC 153102 || ||||| ||||| || ||||||| || |||||||| || ||||| ||| ||||| | Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 153103 AATAAACGCTGGCTTCATTTCTTTATGCTGTTTGTAC 153139 ||||||| ||| | |||||||||||| | ||||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGTAC 255344 >seq524375 Length=364 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 150830 TGGGACAACTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTC 150889 |||| | ||| || || ||||||||| ||| | ||||| || || |||||||||| Sbjct 187 TGGGGCCGCTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTT 246 Query 150890 GGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACCATTTGCTTCATCGTGGCATTCATC 150949 ||||| || ||||| || || || ||| | |||||| || || | || |||||| Sbjct 247 GGTGTTCTAATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATC 306 Query 150950 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGT 151007 |||||||| ||||||||||||||||| |||||||| || ||| |||| ||| || ||| Sbjct 307 GCTGCTCCTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTTGCTGT 364 >seq345864 Length=152 Score = 120 bits (132), Expect = 3e-22 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 152803 GGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCCGATTCCTT 152862 |||||||| |||||||||| |||||| ||| || || |||||||||||||| ||| || Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 152863 CTCTTCCTTCAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCA 152922 | || | ||||| ||||| ||||||||| | || || || |||||||||||||| || Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 152923 GGTATTTTGGGAGGGGCCTTGCTTTCTGC 152951 ||| | || |||| || | |||| ||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq7860 Length=10955 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 152610 AGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTGGCGCTCCACGG 152669 ||||||||| | ||| ||| | || || || ||| ||||||| || |||||||| Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 152670 GGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTA 152728 ||||| | ||||| ||||||||| | || || |||||||| || || ||| || | Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 6595 Query 152729 TCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTC 152788 | || || || ||||| || || ||||||| ||| || |||||||||||| || || Sbjct 6594 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCT 6535 Query 152789 TCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCC 152828 | || || || || ||||| || ||||||| || || || Sbjct 6534 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq5622 Length=97820 Score = 105 bits (116), Expect = 7e-18 Identities = 103/133 (77%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 153239 ATCCTGAATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTT 153298 || ||||||||||||| ||||| || || || | ||||| || |||||| || |||||| Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 153299 GGTTGGCACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCAC 153358 || ||||| || || ||||||||||| ||| | | |||||||| ||||| | || | Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 153359 GAGGCAACGCTCT 153371 | || |||||||| Sbjct 54859 GTGGAAACGCTCT 54847 >seq13424 Length=38927 Score = 96.9 bits (106), Expect = 4e-15 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 151565 ATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGG 151624 ||||||||||| ||| ||||| ||||| ||||| | || |||||||| || || ||| Sbjct 6329 ATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTTGG 6270 Query 151625 CCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCAGCACCATGG 151670 ||||| || |||||||||||||| || | ||| ||||||| |||| Sbjct 6269 CCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545830589413800