Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq12300 93.3 3e-14 seq24902 87.8 1e-12 seq23076 86.0 5e-12 seq2836 84.2 2e-11 >seq12300 Length=44855 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| |||||||| || || || || || ||||||||||| | || ||| | | Sbjct 13060 ATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTCC 13001 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||| |||||||| || | ||| ||| || Sbjct 13000 GATACCATTGACAATGTTAAGGCTAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 12941 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | |||| ||| ||||| ||| |||| |||| || || | || ||||||||| Sbjct 12940 CAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAAC 12881 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGGAA 110501 || ||||| || || || |||| ||||| | || |||| || |||| Sbjct 12880 ATCCAAAAGGAGTCGACCCTGCATTTGGTGCTGCGATTGCGTGGTGGAA 12832 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || || || || || |||||||| | || ||| | Sbjct 12604 ATGCAGATTTTCGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTTGAGAGTTCT 12545 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | || ||| |||||| ||||| || || | || |||||| Sbjct 12544 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAG 12485 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| ||||| | ||| || || ||||| || |||| ||||| ||||||||||||| Sbjct 12484 CAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGAACTCTGGCGGATTACAAT 12425 Query 110453 ATTCAAAAAGAATCTACGTTGCAC 110476 || ||||| || ||||| ||||| Sbjct 12424 ATCCAAAAGGAGTCTACCCTGCAC 12401 >seq24902 Length=68956 Score = 87.8 bits (96), Expect = 1e-12 Identities = 200/301 (66%), Gaps = 0/301 (0%) Strand=Plus/Minus Query 34305 GGACACGATGAGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGAT 34364 || ||| |||| || ||||| ||||| | || || ||| | || |||||| || Sbjct 20557 GGGCACTTTGAGGTCCGTCTCTGGGTTCTTGCAATCGCCACAGAGAACGAACTTGTCAAT 20498 Query 34365 GAAACCATCAAGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCG 34424 ||| | || || ||| | | || ||| | ||| | || |||| ||| | || Sbjct 20497 GAAGTCGTCGAGAAGGGTGCGGAGCTGGTCGGCCTGGTGTGCTCCATTGATAATGTAGCG 20438 Query 34425 TTCGTTTTTGTAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGG 34484 ||||| || | ||| | ||| || ||||| |||||| | || ||| | || || || Sbjct 20437 ATCGTTCTTCTCATCCAAGGTCGTCTGAGCGCCGAGCTCGAAGCCAAAGAATTTGGTTGG 20378 Query 34485 GTAAATGGCCGGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTT 34544 ||| ||| ||| || | ||||| ||||| |||| ||||||| | ||| ||||| Sbjct 20377 GTAGGTGGGCGGTCGACTCAGCGCACGCGCGATGTCGGACATGTTGGGCACGACCGTCTT 20318 Query 34545 GATGCCGTTGCCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAA 34604 |||||| || || | || |||| ||||| || | | ||||| ||| |||||| | Sbjct 20317 GATGCCATTTCCTCTGCCCTCGATCTTGGTCTGGAGGAGAGGCATGCGGTAACGGTAGTA 20258 Query 34605 C 34605 | Sbjct 20257 C 20257 >seq23076 Length=20243 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || |||||||| ||| | || ||||| ||||| || | || ||| || | Sbjct 11010 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTGGAATCTTCC 11069 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || || ||| | | || || |||||| ||||| |||||| | ||| || || Sbjct 11070 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 11129 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | || || | || || || ||||| ||||||| ||| || | | || |||||| Sbjct 11130 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACTCTATCAGACTACAAC 11189 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || || ||||| ||||| ||||| Sbjct 11190 ATTCAGAAGGAGTCTACTCTGCACCTGGTG 11219 >seq2836 Length=35635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 110366 GACAAAGAAGGCGTGCCCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAG 110425 ||||||||||| | ||| ||||| || || || |||| || || || ||||| ||| Sbjct 32561 GACAAAGAAGGAATTCCCCCAGATCAGCAGAGGCTAATTTTCGCTGGAAAGCAGCTTGAG 32502 Query 110426 GATGCCAGAACAATGGCGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||| | |||| |||| |||||||||||||| || || ||||| | ||| |||| Sbjct 32501 GATGGCCGAACTTTGGCCGATTACAACATTCAGAAGGAGTCTACACTCCACCTGGT 32446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410064635814095