Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq12300 98.7 8e-16 seq23076 91.5 1e-13 seq2836 91.5 1e-13 seq30213 82.4 6e-11 seq18120 82.4 6e-11 >seq12300 Length=44855 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || || ||||||||||| | || ||| | | Sbjct 13060 ATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTCC 13001 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || ||||| || ||||| || | ||| ||| ||| Sbjct 13000 GATACCATTGACAATGTTAAGGCTAAGATCCAAGACAAAGAGGGTATTCCCCCGGACCAG 12941 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | |||| ||| ||||| ||| |||| || | | || | || || |||||| Sbjct 12940 CAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAAC 12881 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || ||||||||||| || |||| ||||| || ||||||| || |||| Sbjct 12880 ATCCAAAAGGAGTCGACCCTGCATTTGGTGCTGCGATTGCGTGGTGGAA 12832 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || || ||||| || |||||||| | || ||| | Sbjct 12604 ATGCAGATTTTCGTGAAGACCTTGACAGGGAAGACCATTACATTGGAGGTTGAGAGTTCT 12545 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| ||||||| || || || || | || ||||||| Sbjct 12544 GATACAATTGATAATGTGAAAGCAAAGATTCAGGACAAGGAGGGAATTCCTCCGGATCAG 12485 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || ||||| | ||| || || ||||| || || | | ||| ||||||| ||||| Sbjct 12484 CAAAGGCTTATATTTGCAGGCAAGCAGCTTGAAGATGGAAGAACTCTGGCGGATTACAAT 12425 Query 107736 ATTCAAAAGGAGTCTACGTTGCAC 107759 || |||||||||||||| ||||| Sbjct 12424 ATCCAAAAGGAGTCTACCCTGCAC 12401 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| || ||||| || || |||||||| ||| | || || | Sbjct 12833 AATGCAGATTTTTGTGAAGACTTTGACGGGAAAAACCATAACCTTGGAGGTTGAAAGTTC 12774 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 |||||| | | | | || || ||||| || ||||| ||| | || || || Sbjct 12773 GGATACTATTGACAATGTCAAGGCGAAGATACAAGACAAAGAGGGCATCCCACCAGACCA 12714 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| || ||||| | ||| || || ||||| || || | | || | || || ||||| Sbjct 12713 GCAAAGGCTTATCTTTGCAGGAAAGCAGCTTGAAGATGGGAGGACCCTTGCTGATTACAA 12654 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||| ||||||||||| | || ||||| || | ||||| || || Sbjct 12653 TATTCAGAAGGAGTCTACCCTTCATCTGGTGCTGCGCTTGCGGGGTGG 12606 >seq23076 Length=20243 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| ||| | || ||||| ||||| || | || ||| || | Sbjct 11010 ATGCAGATCTTTGTCAAGACTCTCACTGGCAAGACCATCACTCTGGAGGTGGAATCTTCC 11069 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || |||||| | ||| || ||| Sbjct 11070 GACACCATCGACAATGTGAAGGCGAAGATCCAGGACAAGGAAGGCATTCCCCCTGACCAG 11129 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | || || || ||||| ||||| | || || | | ||||||||| Sbjct 11130 CAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCAGGACTCTATCAGACTACAAC 11189 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||| ||||||||||| ||||| ||||| || Sbjct 11190 ATTCAGAAGGAGTCTACTCTGCACCTGGTGCTG 11222 >seq2836 Length=35635 Score = 91.5 bits (100), Expect = 1e-13 Identities = 141/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| ||||| || ||| | || ||||| || ||||| ||||| ||| ||| Sbjct 32199 AATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTCGAAGTTGAGAGCTC 32140 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 ||||| | | | | || || ||| ||| ||||| ||||| | || || | Sbjct 32139 T-GATACAATTGACAATGTCAAGGCAAAAATTCAGGATAAGGAAGGTATTCCACCCGACC 32081 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| || || | ||| || |||||||| ||||| | || || |||| ||||||| Sbjct 32080 AGCAGAGGCTGATATTTGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCCGACTACA 32021 Query 107734 ACATTCAAAAGGAGTCTAC 107752 |||| || || ||||| || Sbjct 32020 ACATCCAGAAAGAGTCGAC 32002 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| ||||||||||| || | || || || || ||||| | || ||| ||| Sbjct 32654 ATGCAGATTTTTGTCAAGACACTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCT 32595 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || || ||| ||| || |||||||| | ||| ||||| Sbjct 32594 -GATACCATAGATAATGTGAAGGCAAAAATTCAGGACAAAGAAGGAATTCCCCCAGATCA 32536 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| || || || ||||| ||||| | | ||| |||| || ||||| Sbjct 32535 GCAGAGGCTAATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAA 32476 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||||| ||||||||||| | ||| |||| Sbjct 32475 CATTCAGAAGGAGTCTACACTCCACCTGGT 32446 >seq30213 Length=64460 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 107670 GATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGAC 107729 ||||||||| || | || | || || || ||||| ||||||| ||| | | ||| Sbjct 41034 GATCAGCAGCGATTGATCTTCGCCGGAAAGCAGCTCGAGGACGGACGAACTCTTTCCGAC 40975 Query 107730 TACAACATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 |||||||| || ||||||||||| |||||| |||| ||||| ||| | || |||| Sbjct 40974 TACAACATCCAGAAGGAGTCTACTTTGCACTTGGTCTTGAGGTTGAGGGGAGGAA 40920 >seq18120 Length=99179 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| |||||||| || | || || || || || ||| |||| |||| || | Sbjct 92366 ATGCAAATCTTTGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 92425 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | | || || ||||| || || || || | ||| || ||| Sbjct 92426 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 92485 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| |||| || | || || || ||||| ||||||| | ||| | ||||||||||| Sbjct 92486 CAGCGACTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTTTCGGACTACAAC 92545 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGA 107783 || || |||||||| || | ||| | ||| | | ||||||| ||| Sbjct 92546 ATCCAGAAGGAGTCGACTCTCCACCTTGTGCTTCGTCTGCGAGGAGGA 92593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396193769539435