Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_023584.1 Length=170438 Score E Sequences producing significant alignments: (Bits) Value seq862 132 5e-26 seq7860 129 6e-25 seq345864 111 2e-19 seq5622 104 3e-17 >seq862 Length=327473 Score = 132 bits (146), Expect = 5e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 159348 GGTGGAGCACTTCTATCTGCTATTCATGGGGTCACAGTTGAAAATACATTATACGAGGAT 159407 |||| || || |||| |||||||||||| | || | |||||||| |||| || ||| Sbjct 255137 GGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGAT 255196 Query 159408 GGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTATTCT 159467 || || ||||| || || | || || | ||||||||| || || |||||||| Sbjct 255197 GGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCA 255256 Query 159468 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGG 159527 |||||||| | |||||||| ||||| || ||||| || ||| | ||||| || || | Sbjct 255257 ATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACAT 255316 Query 159528 TGGCTTCATTTCTTTATGTTGTTTGT 159553 ||| | |||||||||||||| ||||| Sbjct 255317 TGGTTACATTTCTTTATGTTTTTTGT 255342 >seq7860 Length=10955 Score = 129 bits (142), Expect = 6e-25 Identities = 149/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 159048 CAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGTGCCTTTGCCCTAATTGGTTTC 159107 ||| | || || || |||| |||||| || |||||||| || |||| ||||| |||||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 159108 ATGCTTCGCCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGC 159166 ||| | || || |||||||| || || ||| || | | || || || ||||| || || Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 6573 Query 159167 GTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTTGGTCAGTC 159226 ||||||| ||| |||||||||||||| || ||| | || || ||||| |||||||| Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 159227 CAGTTGGTTTTTCGCTCC 159244 ||||||| || || || Sbjct 6512 TGGTTGGTTCTTTGCGCC 6495 >seq345864 Length=152 Score = 111 bits (122), Expect = 2e-19 Identities = 115/151 (76%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 159217 TTGGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCCGCAATATTCAGGTTCC 159276 ||||||| || |||||||||| ||||| ||||| || || ||||| ||| | ||| Sbjct 1 TTGGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCA 60 Query 159277 TACTCTTCCTACAAGGGTTCCACAATTGGACACTAAACCCCTTCCATATGATGGGAGTTG 159336 | | || | ||||| ||||| || |||||||||||||| |||||||||||||| || | Sbjct 61 TTTTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGG 120 Query 159337 CTGGTATCCTAGGTGGAGCACTTCTATCTGC 159367 ||||| | |||| | || ||||| | ||| Sbjct 121 CTGGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq5622 Length=97820 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 159660 GAATTTGAAACGTTCTACACCAAGAACATTCTTCTGAATGAAGGACTACGTGCTTGGTTG 159719 |||||||| || ||||||||||| || | |||| | |||||||| | |||||||| || Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 159720 GCACCTGCTGATCAACCCCATGAAAACTTCATCTTCCCAGAAGAAGTTCTACCAAGAGGT 159779 ||| || |||||||| ||||||||| | || ||||| || || |||||||| | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 159780 AACGC 159784 ||||| Sbjct 54854 AACGC 54850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 541511791513200