Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq7860 141 1e-28 seq862 132 6e-26 seq345864 105 8e-18 seq524375 102 1e-16 seq13424 91.5 2e-13 >seq7860 Length=10955 Score = 141 bits (156), Expect = 1e-28 Identities = 177/239 (74%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 179189 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTATGGAATTTCGTGGCTCTCCACG 179248 |||||| ||| | || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 6713 AGGGGATTTTACT-CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 6655 Query 179249 GTGCCTTCGCCCTAATTGGATTCATGCTTCGTCAGTTTGAACTGGCACG-TCTCATCGGT 179307 | || || | ||||| || |||||| | ||||| |||||||| || || ||| || | Sbjct 6654 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 6595 Query 179308 ATCCGTCCTTACAATGCGATTGCTTTTACTGGTCCTATTGCCGTATTCGTTAGTGTATTT 179367 | || ||||| ||||| || || || ||| ||| ||||| || || ||| |||||| Sbjct 6594 -TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 6536 Query 179368 CTCATCTACCCACTTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGC 179426 | || || ||||| || || || |||||||||||||||| |||||||||| ||| Sbjct 6535 TTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTGGGGC 6477 >seq862 Length=327473 Score = 132 bits (146), Expect = 6e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 179510 TGGGTGGTGCTCTGCTCTCTGCTATTCATGGAGTAACTGTAGAGAATACATTGTATGAAG 179569 |||||| ||||||||| | |||||||||||| | || |||| ||||| || | ||||| Sbjct 255135 TGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAG 255194 Query 179570 ATGGAGAACAAGCAAACACATTTAAAGCGTTCGACTCTACGCAAGAGGAGGAGACCTATT 179629 |||| || ||||| ||||| | || | || | || |||| || || || |||| Sbjct 255195 ATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATT 255254 Query 179630 CTATGGTTACAGCGAACCGTTTTTGGTCGCAGATCTTCGGGGTTCCGTTTAGCAATAAGC 179689 | ||||| || | ||||| |||||||| || ||||| ||| || | ||| |||||| | Sbjct 255255 CAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAAC 255314 Query 179690 GTTGGTTCCACTTCTTTAAGCTGTTTGT 179717 |||||| || ||||||| | | ||||| Sbjct 255315 ATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq345864 Length=152 Score = 105 bits (116), Expect = 8e-18 Identities = 114/151 (75%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 179381 TTGGACAATCCAGTTGGTTCTTTGCGCCATCGTTTGGTGTTGCGGCGATCTTTAGATTCC 179440 |||| ||||| ||||||| ||||| ||| ||||| ||||| || ||||| | ||| Sbjct 1 TTGGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCA 60 Query 179441 TACTTTTCTTACAAGGTTTCCACAACTGGACACTCAACCCCTTTCACATGATGGGAGTTG 179500 | | || || ||||||||||| ||||||||||| ||||| || || |||||||| || | Sbjct 61 TTTTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGG 120 Query 179501 CAGGTATCCTGGGTGGTGCTCTGCTCTCTGC 179531 | ||| | | || | |||||| || | ||| Sbjct 121 CTGGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq524375 Length=364 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCGTCGCTGCTCCC 177677 ||||| || || || ||| | ||||| | || || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCCT 315 Query 177678 CCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 177718 || ||||||||||| || |||||||| || || |||| || Sbjct 316 CCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 178275 GGTCGTTTGATCTTCCAATATGCATCGTTCAACAACTCCCGTTCACTGCACTTCTTCCTC 178334 || || ||||||||||||||||| ||||| || || ||||| | || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 178335 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGC 178369 || || ||||||||||| || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601488739841400