Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq460352 87.8 2e-12 seq19785 82.4 7e-11 >seq460352 Length=212 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||| || | ||||| || ||||| | |||||||| || || ||||||||||| | Sbjct 13 CCTCCACGCAGACGCAGGACCAAATGCAGAGTAGATTCCTTCTGGATGTTGTAATCAGAC 72 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | || | || | || ||||| || || || || | ||||||||||||||||||||||| Sbjct 73 AGGGTACGTCCA-TCCTCGAGCTGCTTGCCGGCGAAAATCAGACGTTGCTGATCGGGAGG 131 Query 137304 TATGCCTTCTTTGTC 137318 ||||| || || || Sbjct 132 AATGCCCTCCTTATC 146 >seq19785 Length=119778 Score = 82.4 bits (90), Expect = 7e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||||| |||| ||| | || | || || || || || |||||||| || Sbjct 21610 CCTCCTCGTAGCCGCAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 21669 Query 137245 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 137304 | || | ||||||||| || || || ||| ||||||| || ||||||||||| || Sbjct 21670 AGGGTCCGACCGTCTTCGAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCGGGTGGG 21729 Query 137305 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTACT 137364 || || || ||||| || || || | | || | ||||| || || || Sbjct 21730 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCACTGCTCTCGACC 21789 Query 137365 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | ||| | ||||||||| |||| || || ||||| || |||||| Sbjct 21790 TCGAGAGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 21837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 485173565478000