Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq507837 89.7 1e-12 seq29969 87.8 4e-12 >seq507837 Length=291 Score = 89.7 bits (98), Expect = 1e-12 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Plus Query 110667 AAGGGTG-CTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATA 110725 || |||| || |||| ||| |||| || ||| | |||||| |||| ||||||| ||| Sbjct 16 AATGGTGTCTCCAAC-GGAATTGTACCCATGCTCCGAGTCTACAACAACACTGCTCGATA 74 Query 110726 TGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTGGCA 110782 || | ||||||||| ||| || || | ||||| ||||| |||| || ||||| Sbjct 75 CGTCGACCAAGGTGGTAACAAGCGACCAGGTGCCTTTGCCATCTACGTCGAGCCATGGCA 134 Query 110783 TTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGC 110842 || || || || || ||| | || || | || || || ||| |||||| |||| Sbjct 135 CTCGGACATCTTCGAGTTCCTCGATCTCAGGAAGAACCACGGAAAGGAAGAAGTCCGAGC 194 Query 110843 ACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAA 110902 || || | || || || | ||||| | ||| | |||||||| || || || | || Sbjct 195 TCGAGAACTCTTCTACGCCCTCTGGATCCCTGATCTCTTCATGAAGCGAGTCGAACAGAA 254 Query 110903 TGGCATGTGGTCTCTTATGTGTCC 110926 || |||||||| ||||| || Sbjct 255 CGGTGACTGGTCTCTCATGTGCCC 278 >seq29969 Length=80460 Score = 87.8 bits (96), Expect = 4e-12 Identities = 158/227 (70%), Gaps = 8/227 (4%) Strand=Plus/Plus Query 279873 TGGATGGTTTGAAACCTTCACAGCGTAAGATTATATTCAGTTGTTTCAAAAGAAAATTGG 279932 |||| ||| |||| || ||||||||| | || ||| |||| ||||| |||| || Sbjct 64200 TGGACGGTCTGAAGCCAGGTCAGCGTAAGGTCATGTTCGGTTGCTTCAAGCGAAAGCTG- 64258 Query 279933 TAAAG--GAAATTCGTGTTGCTCAGTTAGCAGGTTATGTTTCAGAACATGCAGGTTATCA 279990 || | || || || || || || || |||||||| || || || ||| || || Sbjct 64259 -AAGGCTGAGATCAAGGTCGCCCAATTGGCTGGTTATGTGTCCGAGCACTCAGCATACCA 64317 Query 279991 TCACGGTGA--AGCGTCTCTTCAAGGTGCTATTGTAGGTCTTGCCCAAGATTTTATGGCT 280048 ||| ||||| || |||| || | | |||||||| ||||||||||| | ||| Sbjct 64318 TCATGGTGAGCAGAGTCTGACCATGACG--ATTGTAGGCCTTGCCCAAGACTACGTGGGC 64375 Query 280049 TCAAACAACTTAAATCTGCTTTCACCAAATGGTCAATTTGGTTCTCG 280095 || |||||| | || | || | || ||||||||||||||| |||| Sbjct 64376 TCGAACAACATCAACATCCTGTTGCCCAATGGTCAATTTGGTACTCG 64422 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178420358985315