Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq58939 105 4e-18 seq23076 100 2e-16 seq2836 100 2e-16 seq12300 98.7 6e-16 >seq58939 Length=9406 Score = 105 bits (116), Expect = 4e-18 Identities = 152/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 |||||| || || || ||| || || |||||||| || ||||| || || |||| || Sbjct 135 CACCAAGTGGAGGGTTGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTACGACCGTCCTC 194 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 ||| || |||||||| || |||| |||||||| || | || | ||| || ||||| Sbjct 195 CAACTGCTTTCCGGCGAAGATCAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTGTCCTG 254 Query 33660 AATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| || | ||| ||| | |||||| ||||||||| || | ||||| || | Sbjct 255 GATCTTCGACTTGA-CATTGTCGATGGTGTCTGATGATTCCACTTCCAATGTGATGGTCT 313 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || || |||||||||||| Sbjct 314 TTCCAGTAAGAGTCTTGACGAAGATCTGCATA 345 >seq23076 Length=20243 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || ||||| || | ||||| || || || ||||| || || |||||||| || ||| Sbjct 11692 CCTCCCCTCAATCGCAGGACCAAGTGCAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAG 11633 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| ||||| || || || || ||||| | ||||||||| || | || Sbjct 11632 AGCGTGCGACCGTCCTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCGGGTGGG 11573 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||| || ||||| || || || | | | ||| | ||||| || || || Sbjct 11572 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATAGTGTCTGACGACTCTAC 11514 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 || | |||||||| || || || | || || ||||||||||||||| Sbjct 11513 CTCCAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATA 11465 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| || ||| | || | || | |||||||| || || ||||||||||| || Sbjct 11465 ACCACCTCGCAGACGGAGAACGAGGTGCAAGGTGCTCTCCTTCTGGATGTTGTAATCCGA 11406 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| |||| |||| || ||||| ||||| |||| || |||||||| | || Sbjct 11405 CAGGGTACGTCCGTCCTCCAGCTGCTTTCCAGCAAAGATCAGTCGTTGCTGATCGGGTGG 11346 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||| || || || || || ||| || | ||| | |||||| || || | Sbjct 11345 GATACCCTCCTTATCCTGGATCTTAGCCTTC-ACGTTGTCGATGGTGTCCGAGGACTCTA 11287 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || || || || || | || || ||||||||||||||| Sbjct 11286 CTTCCAGAGTAATGGTCTTGCCGGTCAGAGTCTTGACAAAGATCTGCATA 11237 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | | ||| | ||||| || ||||| ||| || || |||||||| || || Sbjct 11237 ACCACCACGAAGACGCAGCACCAGGTGCAGAGTAGACTCCTTCTGAATGTTGTAGTCTGA 11178 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || | | || || | || || ||||| || || | |||||||| || | || Sbjct 11177 TAGAGTCCTGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCAGGGGG 11118 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | ||||| ||||| || ||| |||| ||| ||| | ||||||| ||||||| Sbjct 11117 AATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCGATGGTGTCGGAAGATTCCA 11059 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | ||||| || || || || | || || ||||||||||||||| Sbjct 11058 CCTCCAGAGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATA 11009 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | || | || ||||| ||| || || |||||||| ||||| Sbjct 11921 ACCACCACGCAGACGGAGAACGAGGTGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGA 11862 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 ||| || || |||| || | || || || ||||| ||||| |||||||| || | || Sbjct 11861 GAGGGTTCGACCGTCCTCAAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCAGGAGG 11802 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| || || | ||| ||| | ||||||| || || | Sbjct 11801 AATGCCCTCCTTGTCCTGAATCTTAGCCTTGA-CATTGTCGATGGTGTCGGAAGACTCGA 11743 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || | || || || || || || | ||| || || ||||||||||| Sbjct 11742 CCTCGAGAGTAATGGTCTTGCCGGTGAGCGTCTTAACGAAGATCTGCAT 11694 >seq2836 Length=35635 Score = 100 bits (110), Expect = 2e-16 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||||||| | ||| |||||| || |||||||| || | | || || | || || Sbjct 32218 ACCAAATGCAAGGTGGACTCTTTCTGAATGTTGTAGTCAGCCAAAGTTCGACCATCCTCA 32277 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | ||| ||||| ||||| ||||| | |||||||||| | || | ||| |||||||| Sbjct 32278 AGTTGCTTTCCCGCAAAGATCAATCTCTGCTGATCTGGAGGAATACCCTCTTTGTCTTGT 32337 Query 33661 ATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGA---TTCCACGTCAACCGTGATCGT 33716 || || || || |||| || | ||||| ||| ||| || || | ||||| || Sbjct 32338 ATCTT-TGCTTTGACATTATCGATTGTGTC---TGAGCTTTCAACTTCCAAAGTGATTGT 32393 Query 33717 TTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 |||||||| | ||||| ||||||||||||||| Sbjct 32394 CTTACCTGTAAGAGTTTTAACAAAGATCTGCATA 32427 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||||| | || | || | ||| || |||||||| || || ||||||||||| | Sbjct 31515 ACCACCTCGGAGGCGGAGAACAAGATGCAGGGTGCTCTCCTTCTGAATGTTGTAATCTGC 31574 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || || | || || || ||||| || | | ||||||||| | || Sbjct 31575 TAGGGTGCGGCCATCCTCAAGCTGCTTCCCAGCAAAGATGAGCCTCTGCTGATCCGGTGG 31634 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| ||| ||| |||| |||| || | ||| || |||| Sbjct 31635 GATCCCCTCCTTGTCCTGAATCTTCGCTTTC-ACATTATCGATGGTATCAGAACTCTCCA 31693 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | |||| |||||||| || ||||| || ||||| ||||| |||||||| Sbjct 31694 CCTCAAGTGTGATCGTCTTTCCTGTCAAGGTTTTCACAAAAATCTGCAT 31742 Score = 91.5 bits (100), Expect = 1e-13 Identities = 169/243 (70%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || |||||||||||||| | ||||| || || ||| ||||| || ||| Sbjct 32644 AAAATCTGCATCCCACCTCTCAAACGAAGAACCAAGTGGAGGGTGGATTCTTTCTGGATG 32703 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| | | || || | || ||||| |||||||| ||||| |||| | |||| Sbjct 32704 TTGTAATCAGCCAAAGTACGCCCATCCTCCAACTGTTTTCCAGCAAAGATCAGCCTCTGC 32763 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | || || ||||| |||||| | || |||| || | || || Sbjct 32764 TGGTCTGGAGGGATTCCCTCCTTGTCCTGAATTTT-GGCTTTGACATTATCAATTGTATC 32822 Query 33690 ---GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTG 33746 ||| || || || | || || || || || || | ||||| ||||||||||| Sbjct 32823 AGAGCT---CTCGACCTCGAGAGTTATGGTCTTTCCAGTGAGAGTTTTGACAAAGATCTG 32879 Query 33747 CAT 33749 ||| Sbjct 32880 CAT 32882 >seq12300 Length=44855 Score = 98.7 bits (108), Expect = 6e-16 Identities = 168/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| | ||| || | ||||||||| || || ||| ||||| ||| Sbjct 12822 AAAATCTGCATTCCACCACGCAATCGCAGCACCAAATGCAGGGTCGACTCCTTTTGGATG 12881 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||||| | || | | | || ||||| || || || ||||||||||| | |||| Sbjct 12882 TTGTAATCGGCTAAGGTCCTTCCATCTTCCAACTGCTTACCAGCAAAAATCAACCTCTGC 12941 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | ||| |||||||| || || | | ||||| ||| | ||| || Sbjct 12942 TGGTCCGGGGGAATACCCTCTTTGTCTTGGATCTT-AGCCTTAACATTGTCAATGGTATC 13000 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || || | || || ||||| || || || || || ||||| |||||||| Sbjct 13001 GGAACTCTCAACCTCCAAAGTAATGGTTTTTCCAGTCAAGGTCTTAACAAATATCTGCAT 13060 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||||| | ||| | |||||| || || ||| || ||||| ||||||||||||| Sbjct 13290 CCACCTCGGAGACGGAGCACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCA 13349 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || || || | || || | ||| || || ||||| ||||| | |||||||||| | || Sbjct 13350 AGGGTTCGACCATCTTCGAGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGG 13409 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGAT-TCCA 33700 | ||| || || || || || | | |||| || | |||||| | | | || | Sbjct 13410 ATACCCTCCTTATCCTGGATCTT-GGCCTTGACATTATCAATGGTGTC-CGAGCTCTCAA 13467 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || | || || ||||| || || | ||||| |||||||| |||||| Sbjct 13468 CTTCCAAGGTTATGGTTTTCCCGGTAAGGGTTTTGACAAAGATTTGCATA 13517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 326492984356800