Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2580 134 1e-26 seq23651 132 5e-26 seq25376 131 2e-25 seq2836 82.4 7e-11 >seq2580 Length=28588 Score = 134 bits (148), Expect = 1e-26 Identities = 353/530 (67%), Gaps = 18/530 (3%) Strand=Plus/Plus Query 46746 GCGTTCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAG 46805 ||| ||||| | | || ||||| ||| ||||| ||||||||| | |||||||| Sbjct 11832 GCGATCGAGACCATCCCTTGCGTGGCCAAGAAGGCGCAGTGGGCCCTCCGCTGGATCGAT 11891 Query 46806 AGCGAGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttt 46865 || ||| | | || ||||| || || || |||||| ||||| || | || Sbjct 11892 GGCT---CCGAGTCCTTTGCGGAGCGGATCGTTGCCTTCGCGTGCGTCGAGGGGATCTTC 11948 Query 46866 ttttCGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTG 46925 || ||||| ||||| | | || |||| | |||| ||| ||||||| ||| || Sbjct 11949 TTCTCGGGGAGTTTCTGCTCAATATTTTGGCTAAAAAAGCGAGGGTTAATGCCTGGCTTG 12008 Query 46926 ACGTTCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTC 46985 |||||| || || |||||||||| ||||| || || ||| ||||| ||||| || Sbjct 12009 ACGTTCTCCAATGAACTGATCTCGCGAGACGAGGGCCTCCACTGCGACTTCGCGTGCCT- 12067 Query 46986 TATTACAAGACGCGCGTGAATG--AGAAATTAAACTCGGA-CACGATCCTGAGCATGTTT 47042 || || ||| | | | |||| | | | ||| | || | | | || | Sbjct 12068 ----ACTCTACTCGCTTCTAAGGAAGAAGCTGAGCGAGGAGCGCG-TGAAGGGGATCGTC 12122 Query 47043 AGGGAGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCG--GCGCTGCCCGTCGCCTTGC 47100 | || |||||| |||||| ||||||||| || |||| |||||||| ||| || Sbjct 12123 CGCGACGCGGTGGACATCGAGAAGGAGTTTGTT--TGCGACGCGCTGCCGTGCGCGCTGG 12180 Query 47101 TGGGCATGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGG 47160 |||| ||||||| | ||| || | ||||| ||||||||||| ||| | || |||| Sbjct 12181 TGGGGATGAACGGGGACCTAATGAGCCAGTATATCGAGTTTGTGGCTGATAGGCTCTTGG 12240 Query 47161 TGCAGCTCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAAC 47219 ||| || || | || | | |||||||| || |||||||| | ||| | Sbjct 12241 GCGCGCTAGG-GTACGGCAAGGTGTACAATGCTCGGAACCCGTTTGATTGGATGGAGCTG 12299 Query 47220 ATTTCGCTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTA 47269 || ||| | |||| || || ||||| || |||||| | ||||||||||| Sbjct 12300 ATCTCGTTGCAGGGTAAGACTAATTTCTTTGAGAAAAGGGTCGGAGAGTA 12349 >seq23651 Length=24420 Score = 132 bits (146), Expect = 5e-26 Identities = 331/495 (67%), Gaps = 11/495 (2%) Strand=Plus/Minus Query 147884 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCGC 147940 ||||||| | ||||||||| |||||||||| ||| | ||||| |||||| || | Sbjct 17874 AGATGTCCGAGTGCCAGGGCTCAATGTAGATGGCAAAGGCACCGGGACGCTTGTTGCCTC 17815 Query 147941 CCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTCG 148000 |||||||||||| ||| | ||||||| |||| |||| ||||||| | | ||| | | Sbjct 17814 CCTGGTCGACATAGCGAGCAGTGTTGTTGTACACTCGCAGCATGGGTACGATACCGTTGG 17755 Query 148001 CAGTGCCGTTGGTGGAATTGATCT-TGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG 148059 |||||||| ||| | || | ||| ||||| | | ||| | ||| | Sbjct 17754 AGACACCGTTGGTTCCTGCGATGTATGAT-CCGGTAGCTCGGATGTTGTGGATGTTGAGA 17696 Query 148060 CCAATGCCGCCG-CCGTACTTTGATATGGCAGCGCAATCGCC--CAATGTCGTGTAGATG 148116 || || || ||| |||| ||| || || || ||| || | || || |||||| Sbjct 17695 CCGATACCTCCGGCCGT-CTTGGAGAT--CATGGCACACGTCTTCAGCGTGTCGTAGATT 17639 Query 148117 CCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGC 148176 || ||||| ||||| || | || | ||| || ||||| | | ||| || | | Sbjct 17638 CCCTCGATAGAGTCGTCCTTCATGCAGACCAAGAAGCACGACGAAAGTTGTGGGTTGGGT 17579 Query 148177 GTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGA 148236 || |||| ||| || || || ||||| ||||| || | ||||| | Sbjct 17578 GTGCCCGAGTTGAAGAGCGTAGGCGAAGCGTGGGTAAAGGTCTTCTCGGACATCAAGTTG 17519 Query 148237 TACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGC 148296 || ||||| || ||| |||| || ||||||||||| || | ||||| ||||| ||| Sbjct 17518 TAGGTCTCGATGGCGGACTCGACATCATCGCCGTGAATACCGACAGCGACACGCATCAGC 17459 Query 148297 ATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCGAGG 148356 |||||||||||||| || || || | |||||| | || || || | |||||| Sbjct 17458 ATGTGCTGTGGTCGCTCTGCTACCCGTCCATTGATCCTCAGCAGGTACGACCTCTCGAGG 17399 Query 148357 GTTTTGTAACCAAAG 148371 || ||| |||||||| Sbjct 17398 GTCTTGAAACCAAAG 17384 >seq25376 Length=12287 Score = 131 bits (144), Expect = 2e-25 Identities = 348/525 (66%), Gaps = 14/525 (3%) Strand=Plus/Plus Query 46750 TCGAGCACGTGCCATGCGTTCGCAAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCG 46809 ||||| ||| || ||||| ||||||||| ||||||||| | |||||||| || Sbjct 9715 TCGAGACCGTCCCTTGCGTGGCCAAAAAGGCTCAGTGGGCCCTCCGCTGGATCGACGGCT 9774 Query 46810 AGACCGCCACGCTGGCCGAGCGCATGGTGGCATTCGCGATAGTCGAAGGCGTGttttttt 46869 ||| || | || ||||| || || || ||||| ||||| || | || || | Sbjct 9775 ---CCGAGACCTTTGCGGAGCGGATCGTTGCCTTCGCTTGCGTCGAGGGGATCTTCTTCT 9831 Query 46870 CGGGCAGTTTTGCCGCCATTTTTTACATTAAAACCAAAGGCATAATGCCGGGCCTGACGT 46929 |||| ||||| | | || |||| | |||| ||| ||||||| ||| |||||| Sbjct 9832 CGGGGAGTTTCTGCTCAATATTTTGGCTAAAAAAGCGAGGGTTAATGCCTGGCTTGACGT 9891 Query 46930 TCAGTAACGAGTTGATCTCGCGCGACGAAGGACTACACACGGACTTTGCGTGTCTCTATT 46989 || || || |||||||||| ||||| || || ||| ||||| ||||| || Sbjct 9892 TCTCCAATGAACTGATCTCGCGAGACGAGGGCCTCCACTGCGACTTCGCGTGCCT----- 9946 Query 46990 ACAAGACGCGCGTGAATG--AGAAATTAAACTCGGA-CACGATCCTGAGCATGTTTAGGG 47046 || || ||| | | | |||| | | | ||| | || | | | || | | | Sbjct 9947 ACTCTACTCGCTTCTAAGGAAGAAGCTGAGCGAGGAGCGCG-TGAAGGGGATCGTGCGCG 10005 Query 47047 AGGCGGTGAGCATCGAAAAGGAGTTTTTTACTGCGGCGCTGCCCGTCGCCTTGCTGGGCA 47106 | |||||| ||||| |||||||| | || |||||||| ||| ||| |||| | Sbjct 10006 ACGCGGTGGAAATCGAGAAGGAGTTCGTGTGTGACGCGCTGCCGTGCGCATTGGTGGGGA 10065 Query 47107 TGAACGCACAGTCTATGTGCGAATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGC 47166 |||||| | |||| || | || || ||||||||||| ||| | || |||| || Sbjct 10066 TGAACGGGGACCTTATGAGCCAGTACATCGAGTTTGTGGCTGATAGGCTCTTGGGCGCGC 10125 Query 47167 TCGGACAACCGAAATAT-TTTAATGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCG 47225 | || || | || | | |||||||| || |||||||| | ||| | || ||| Sbjct 10126 TAGG-GTACGGCAAGGTGTACAATGCTCGGAACCCGTTTGATTGGATGGAGCTGATCTCG 10184 Query 47226 CTCGAGGGCAAAACCAATTTTTTCGAGAAACGAGTCGGAGAGTAT 47270 | |||| || || ||||| || ||||| | |||||||||||| Sbjct 10185 TTGCAGGGTAAGACTAATTTCTTTGAGAAGAGGGTCGGAGAGTAT 10229 >seq2836 Length=35635 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||||||||| | | |||||||| || |||||||||||| || || | ||| || Sbjct 31989 AACCAAATGAAGAGTCGACTCTTTCTGGATGTTGTAGTCGGCCAAAGTCCTGCCATCCTC 32048 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 ||||||||| || | | | || || | ||| || || || || || ||||| ||||| Sbjct 32049 GAGCTGTTTTCCAGCAAATATCAGCCTCTGCTGGTCGGGTGGAATACCTTCCTTATCCTG 32108 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 ||||||| || | | || | ||||| | ||| ||||||| || | || || Sbjct 32109 AATTTTTGCCTTGACATTGTCAATTGTATCAGAGCTCTCAACTTCGAGAGTAATAGTCTT 32168 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| ||||| || | || || ||||| Sbjct 32169 GCCAGTAAGAGTCTTAACAAAGATTTGCAT 32198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 473323089119400