Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq41724 114 1e-20 seq12300 86.0 6e-12 seq2836 84.2 2e-11 seq23651 82.4 7e-11 >seq41724 Length=31058 Score = 114 bits (126), Expect = 1e-20 Identities = 135/182 (74%), Gaps = 2/182 (1%) Strand=Plus/Minus Query 110712 GCTCGATGATATTATTGTTCACGATGACGTCGGCGGCAGCGAAAAAGGCGAGAACGTGTT 110771 |||| | || || | ||| ||||| |||| | ||| ||||| |||||||||||||| Sbjct 24820 GCTCAACGAGGTTCTCGTTGACGATACCGTCCGAGGCGGCGAAGAAGGCGAGAACGTGAG 24761 Query 110772 TAAGAAAGAATCGTTCCTTGTCGTTCAGTTTATTGTTCCAGTCTTCAAAGTCCTTGGACA 110831 | ||| ||||| |||||||| || || |||| |||||| | | ||||||||||| Sbjct 24760 AGATGAAGTGACGTTCGTTGTCGTTGAGCTTGTTGTCCCAGTCGTGCATGTCCTTGGACA 24701 Query 110832 TGTCGATCTCTTCGACCTTCCAGTGACAATCGACCGCCTTCTTGTACGATTGCCAAAGAT 110891 ||||||||| ||| | ||||| | || | | |||||||||||| ||||| |||| Sbjct 24700 AGTCGATCTCCTCGGCAGTCCAGAAAGAAGCCTCTGCCTTCTTGTACATTTGCC--AGAT 24643 Query 110892 CT 110893 || Sbjct 24642 CT 24641 >seq12300 Length=44855 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | ||||| ||| | || || | ||||| || | Sbjct 13516 ATGCAAATCTTTGTCAAAACCCTTACCGGGAAAACCATAACCTTGGAAGTTGAGAGCTCG 13457 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || || | || || || || ||||| |||||||| || || |||||| Sbjct 13456 GACACCATTGATAATGTCAAGGCCAAGATCCAGGATAAGGAGGGTATCCCACCAGATCAG 13397 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||||| ||||||||||||| | ||| | ||||||||| Sbjct 13396 CAGAGGTTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTTGCCGATTACAAC 13337 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 || ||||| ||||||||| | || || ||| Sbjct 13336 ATCCAAAAGGAATCCACCCTCCACTTGGTG 13307 >seq2836 Length=35635 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || || | ||||| | ||||| ||| | Sbjct 32426 ATGCAGATCTTTGTTAAAACTCTTACAGGTAAGACAATCACTTTGGAAGTTGAAAGCTCA 32367 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || ||||| | || ||| ||| || || ||||||||||| || || |||||| Sbjct 32366 GACACAATCGATAATGTCAAAGCAAAGATACAAGACAAAGAGGGTATTCCTCCAGATCAG 32307 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | || || ||||| || |||| | ||| | | || ||||| Sbjct 32306 CAGAGATTGATCTTTGCGGGAAAGCAACTTGAGGATGGTCGAACTTTGGCTGACTACAAC 32247 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGT 25383 ||||| ||||| |||||| | ||||| || Sbjct 32246 ATTCAGAAAGAGTCCACCTTGCATTTGGT 32218 >seq23651 Length=24420 Score = 82.4 bits (90), Expect = 7e-11 Identities = 177/262 (68%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 138144 GTTGAGGCCGATGCCGCCT-CCGTGTTTAGATATCATGGCACAATCGTTGAGAGTTCTAT 138202 |||||| ||||| || || |||| || || ||||||||||| || || || | Sbjct 17702 GTTGAGACCGATACCTCCGGCCGTCTTG-GAGATCATGGCACACGTCTTCAGCGTGTCGT 17644 Query 138203 AGATGCCGTTTATGCTGTCTTCCTGGATGTTGAGTAGATAACACGACGACATTTGAGGCA 138262 |||| || | || ||| |||| ||| || | | |||||||| | ||| || Sbjct 17643 AGATTCCCTCGATAGAGTCGTCCTTCATGCAGACCAAGAAGCACGACGAAAGTTGTGGGT 17584 Query 138263 TTTTCATGCCAGCCGAGAATAGAGTGGGACTAGCGTGGGTAAACATTTTCGAGCGCATCA 138322 | |||| | ||| || || || |||||||||||| | ||| | ||||| Sbjct 17583 TGGGTGTGCCCGAGTTGAAGAGCGTAGGCGAAGCGTGGGTAAAGGTCTTCTCGGACATCA 17524 Query 138323 ATCTATATGACTCGATCGCACTCTCGATATCATCACCATGAATCTGAAGAGCGACACGCA 138382 | | || | |||||| || ||||| |||||| || ||||| | ||||||||||| Sbjct 17523 AGTTGTAGGTCTCGATGGCGGACTCGACATCATCGCCGTGAATACCGACAGCGACACGCA 17464 Query 138383 TCAGCATGTGTTGAGGTCTCTC 138404 |||||||||| || |||| ||| Sbjct 17463 TCAGCATGTGCTGTGGTCGCTC 17442 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442023721552800