Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq7860 172 6e-38 seq862 140 4e-28 seq5622 127 2e-24 seq4549 127 2e-24 seq345864 114 1e-20 seq524375 98.7 1e-15 seq13424 91.5 2e-13 seq104104 82.4 9e-11 >seq7860 Length=10955 Score = 172 bits (190), Expect = 6e-38 Identities = 171/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 159643 CGCTGGTGCCAACTTGGAGGGATTTGGTCCTTTGTTGCTCTCCACGGTGCATTCGCTCTC 159702 || ||||| ||| | || || | ||| | ||||||||||||||||| || || | || Sbjct 6700 CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTA 6641 Query 159703 ATAGGTTTTATGCTACGGCAATTTGAAATTGCTCG-TCTAGTTGGTATCCGTCCTTACAA 159761 |||||||| ||| |||| ||||||||| ||||||| ||| ||| | || ||||| || Sbjct 6640 ATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATTGCGACCTTATAA 6582 Query 159762 TGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTATTCCTTATCTATCCACT 159821 ||| || || ||||||| ||| |||||||||||||| |||||| | || |||||||| Sbjct 6581 TGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACT 6522 Query 159822 GGGTCAGTCTTCATGGTTCTTTGCACCTAGTTTCGGGGT 159860 ||||||||| ||||||||||| |||||||| || || Sbjct 6521 AGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq862 Length=327473 Score = 140 bits (154), Expect = 4e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 159943 GGTATACTAGGTGGAGCACTGTTGTGTGCAATCCATGGTGCTACTGTAGAGAACACATTG 160002 ||| || | |||| || ||| | ||||| || ||||||||||| |||| || || || Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 160003 TTTGAAGATGGAGAACAAGCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAG 160062 ||||||||||| || ||||| ||||| | || || | || ||||||| ||||| Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 160063 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCATTTTCT 160122 |||||||| |||||||| | |||||||| ||||| || ||||| || || | ||||| Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 160123 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 160157 || || | ||| | ||||| || ||||| ||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq5622 Length=97820 Score = 127 bits (140), Expect = 2e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 160259 ATCCTGAATTTGAGACCTTCTACACCAAGAACATCCTATTGAATGAAGGACTTCGTGCTT 160318 || ||||||||||||| ||||||||||| || | || || |||||||| || |||||| Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 160319 GGATGGCACCTGCTGATCAACCACATGAAAACTTTATCTTCCCTGAGGAAGTACTACCTA 160378 |||||||| || |||||||| ||||||||| |||| ||||||||||| || ||||| Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 160379 GAGGTAACGCACT 160391 | || ||||| || Sbjct 54859 GTGGAAACGCTCT 54847 >seq4549 Length=62305 Score = 127 bits (140), Expect = 2e-24 Identities = 205/294 (70%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 159989 TAGAGAACACATTGTTTGAAGATGGAGAACAAG---CAAACACATTTAAGGCGTTTGAGC 160045 |||| || || || |||||||||| || | | |||| ||||| || ||| | Sbjct 53480 TAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTTAACA 53421 Query 160046 CTACTCAAGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCT 160105 ||||||| || | |||||||| |||||||| || |||| ||| ||||| || |||| Sbjct 53420 TAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCT 53361 Query 160106 TCGGTGTTGCATTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTA 160165 | | ||||| ||||| | || | ||| | || || || || || ||||| || | | Sbjct 53360 TTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAA 53301 Query 160166 TGGGTCTATGGACATCCTCTATTGGCATTATTGGTCTTGCTTTCAACCTTCGTGCTTACG 160225 ||| |||| | || |||| || ||||||| || | ||||| ||||| || | Sbjct 53300 CTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATG 53241 Query 160226 ATTTCGTGAGTCAGGAGATTAGAGCAGCAGAAGATCCTGAATTTGAGACCTTCT 160279 | ||| | ||| || || | |||||| ||||||||||||||||||| |||| Sbjct 53240 ACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq345864 Length=152 Score = 114 bits (126), Expect = 1e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 159835 TGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTGTTGTTCCTTCAG 159894 ||||| ||||| || ||||| || || ||||||||||| | ||| | ||||| | || Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 159895 GGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGT 159954 |||||||| |||||||| || ||||| |||||||||||||| || |||||| || |||| Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGGA 134 Query 159955 GGAGCACTGTTGTGTGCA 159972 | || || | |||||| Sbjct 135 GCTGCTCTTCTTTGTGCA 152 >seq524375 Length=364 Score = 98.7 bits (108), Expect = 1e-15 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Plus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||||| ||||| ||| || | ||||| | || | |||||||| ||||| || Sbjct 195 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 254 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTC 157793 ||||| ||||| | | ||||||| | ||||| || | |||||| ||||||||| Sbjct 255 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTC 313 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTC 157836 | ||||||||||| || || ||||| || || ||| |||| || Sbjct 314 CTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 158393 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 158452 || || |||||||||||||| ||| ||||| || || ||||| || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 158453 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 158487 || || |||||||| || || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 >seq104104 Length=106 Score = 82.4 bits (90), Expect = 9e-11 Identities = 75/95 (79%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 160021 GCAAACACATTTAAGGCGTTTGAGCCTACTCAAGAAGAAGAGACTTATTCTATGGTCACT 160080 ||||| ||||| || ||| | | ||||||| ||||| |||||||| ||||||||| Sbjct 12 GCAAATACATTCCGTGCTTTTAACGCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 71 Query 160081 GCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGC 160115 || |||||||| ||||| || ||||| || ||||| Sbjct 72 GCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGC 106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569070743238000