Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_026924.1 Length=174885 Score E Sequences producing significant alignments: (Bits) Value seq345864 129 7e-25 seq7860 116 4e-21 seq524375 114 1e-20 seq13424 100 3e-16 >seq345864 Length=152 Score = 129 bits (142), Expect = 7e-25 Identities = 118/149 (79%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 162132 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 162191 ||||| || |||||||||| ||||| ||||| || ||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 162192 TTGTTTCTTCAAGGATTCCATAACTGGACCCTGAACCCCTTCCATATGATGGGAGTTGCT 162251 |||||| | ||||| |||||||||||||| || ||||| |||||||||||||| || ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 162252 GGTATACTAGGTGGAGCACTTCTATCTGC 162280 ||| || |||| | || ||||| | ||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq7860 Length=10955 Score = 116 bits (128), Expect = 4e-21 Identities = 157/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 161939 AGGGGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCATGG 161998 ||||||||| || ||| ||| | || || || |||| |||||| || ||||| || Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 161999 TGCCTTCGCCCTAATTGGATTCATGCTCCGTCAGTTTGAACTGGCACGTCTTATTGGTAT 162058 || || | ||||| || |||||| | ||||| |||||||| || || | || | Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATT 6594 Query 162059 CCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCT 162118 || || || ||||| || || ||||||| ||| |||||||||||||| || ||| | Sbjct 6593 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTT 6534 Query 162119 TATCTACCCATTGGGTCAGTCCAGTTGGTTTTTCGCTCC 162157 || || ||| | |||||||| ||||||| || || || Sbjct 6533 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq524375 Length=364 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 159960 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 160019 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 160020 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 160078 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 160079 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 160120 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq13424 Length=38927 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 160677 GGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTCACTTCACTTCTTCCTG 160736 || || ||||||||||||||||| ||||| || || ||||| | || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 160737 GCAGCATGGCCTGTAGTCGGAATCTGGTTCACTGCTCTTGGTGTTAGCACCATGG 160791 || || ||||||||||| || ||||||||||| ||| | ||| | ||||| |||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555644016873000