Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_026926.1 Length=192108 Score E Sequences producing significant alignments: (Bits) Value seq7860 132 6e-26 seq862 131 2e-25 seq4549 122 1e-22 seq524375 109 7e-19 seq345864 100 3e-16 seq13424 100 3e-16 seq214152 84.2 3e-11 >seq7860 Length=10955 Score = 132 bits (146), Expect = 6e-26 Identities = 175/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 182611 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 182670 |||||| ||| | || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 6713 AGGGGATTTTACT-CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 6655 Query 182671 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGA 182729 | || || | || || ||||||||| | | ||||||||||||||||| ||| || | Sbjct 6654 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 6596 Query 182730 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTGTTC 182789 | ||||||| ||||| || || || |||| ||| |||||||| || || ||| ||| Sbjct 6595 TTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 6536 Query 182790 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 182848 | || ||||| | || ||||| |||||| || ||||| |||||||| | ||| Sbjct 6535 TTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTGGGGC 6477 >seq862 Length=327473 Score = 131 bits (144), Expect = 2e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 182925 GGTATACTGGGTGGAGCACTGCTCAGTGCTATCCATGGTGTCACAGTAGAGAATACCTTG 182984 ||| || |||||| || ||||| ||||||| ||||||| || |||| ||||| || Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 182985 TATGAAGATGGAGAACAGGCAAACACATTTAAAGCGTTCGATTCCACTCAGGAGGAGGAG 183044 | ||||||||| || ||||| ||||| | || | | | ||||| | || || Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 183045 ACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGC 183104 || ||||| ||||| || | || || |||||||| |||||||| ||| || | ||| | Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 183105 AATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGT 183139 ||||| | |||||| || ||||||||||| ||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq4549 Length=62305 Score = 122 bits (134), Expect = 1e-22 Identities = 157/217 (72%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 183045 ACCTATTCGATGGTTACAGCGAATCGTTTTTGGTCACAAATCTTCGGGGTTGCGTTTAGC 183104 || ||||| ||||| || || || | |||||||| |||||||| | |||||| ||| | Sbjct 53403 ACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCC 53344 Query 183105 AATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCT 183164 |||| ||||||| ||||||||||| || ||||| || | | ||| | || | Sbjct 53343 GATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGG 53284 Query 183165 TCTATTGGGATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGTCAAGAG 183224 || |||| || |||| || |||| || || ||||| ||||| || | |||||| Sbjct 53283 GCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAA 53224 Query 183225 ATTAGAGCAGCAGAAGATCCTGAGTTCGAGACGTTCT 183261 || | |||||| |||||||||| || ||||| |||| Sbjct 53223 ATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq524375 Length=364 Score = 109 bits (120), Expect = 7e-19 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 180981 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 181040 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 181041 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 181099 ||||| || || || ||| | ||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 181100 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 181141 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq345864 Length=152 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 182816 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCCTGTTGTTCCTTCA 182875 ||||||||| || || ||||| || || || |||||| | ||| | ||||| | || Sbjct 14 TTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCA 73 Query 182876 GGGTTTCCACAACTGGACACTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTGGG 182935 |||||||| ||||||||||| ||||| |||||||||||||| || |||||| || | || Sbjct 74 AGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGG 133 Query 182936 TGGAGCACTGCTCAGTGC 182953 | || || || |||| Sbjct 134 AGCTGCTCTTCTTTGTGC 151 >seq13424 Length=38927 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 181698 GGTCGCTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 181757 || || |||||||||||||||||| ||||| || || ||||| | || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 181758 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGG 181812 || || ||||||||||| || |||||||||||||| | || | ||||| |||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 >seq214152 Length=122 Score = 84.2 bits (92), Expect = 3e-11 Identities = 95/124 (77%), Gaps = 4/124 (3%) Strand=Plus/Plus Query 182658 GTGGCTCTCCACGGTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCT 182717 || ||| | || ||||| || | | ||||| ||||||||| | ||||||||| | ||| Sbjct 1 GTAGCTTTGCATGGTGCTTTTGGCTTGATTGGATTCATGCTTCGCCAATTTGAATTGGCT 60 Query 182718 CGC-CTGATTGGAATCA-GACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTAT 182775 ||| ||| || ||| | ||||||| || || |||||||||||||| |||||| | || | Sbjct 61 CGCTCTG--TGCAATTACGACCTTATAACGCCATTGCTTTTTCTGGACCTATTTCCGTTT 118 Query 182776 TCGT 182779 | || Sbjct 119 TTGT 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610377391591200