Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq345864 118 2e-21 seq4549 113 7e-20 seq862 104 3e-17 seq524375 102 1e-16 seq7860 102 1e-16 >seq345864 Length=152 Score = 118 bits (130), Expect = 2e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 176295 GGTCAATCTTCCTGGTTCTTTGCCCCCTCCTTTGGTGTGGCAGCAATCTTTAGATTCCTA 176354 |||||||| ||||| ||||| || ||||| || ||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 176355 TTGTTTCTTCAGGGTTTCCACAACTGGACACTGAACCCCTTCCATATGATGGGAGTTGCT 176414 |||||| | || |||||||| ||||||||||| ||||| |||||||||||||| || ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 176415 GGTATACTAGGTGGAGCACTACTATCTGCA 176444 ||| || |||| | || || || | |||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGCA 152 >seq4549 Length=62305 Score = 113 bits (124), Expect = 7e-20 Identities = 155/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 176535 ACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGT 176594 || ||||| ||||| || || |||| ||| ||||| |||||||| | |||||| ||| Sbjct 53403 ACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCC 53344 Query 176595 AATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGTCCCTGTCATGGGTCTTTGGGTCTCA 176654 |||| ||||| | ||||||||||| || ||||| || | | ||| | || | Sbjct 53343 GATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGG 53284 Query 176655 AGTATTGGCATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTGAGCCAAGAG 176714 | |||| || |||| || |||| || || ||||| ||||| || | ||||| Sbjct 53283 GCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAA 53224 Query 176715 ATTAGAGCAGCAGAAGATCCTGAGTTTGAAACTTTCT 176751 || | |||||| |||||||||| ||||| ||||||| Sbjct 53223 ATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq862 Length=327473 Score = 104 bits (114), Expect = 3e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 176415 GGTATACTAGGTGGAGCACTACTATCTGCAATCCATGGCGTTACTGTTGAAAATACCCTA 176474 ||| || | |||| || || |||| ||| || ||||| | ||| | |||||||| || Sbjct 255128 GGTGTATTGGGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTA 255187 Query 176475 TATGAAGATGGAGAACAGAACAACACCTTCACTGCGTTCGATTCCACGCAGGAGGAAGAG 176534 | ||||||||| || || || ||| ||| | | | || || | ||||| Sbjct 255188 TTTGAAGATGGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAA 255247 Query 176535 ACCTATTCGATGGTTACTGCGAACCGCTTCTGGTCGCAAATCTTCGGGGTTGCGTTTAGT 176594 || ||||| ||||| || | |||||||| ||||| |||||||| ||| || | ||| Sbjct 255248 ACTTATTCAATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCC 255307 Query 176595 AATAAGCGTTGGCTTCACTTCTTTATGTTGTTTGT 176629 ||||| | |||| | || ||||||||||| ||||| Sbjct 255308 AATAAACATTGGTTACATTTCTTTATGTTTTTTGT 255342 >seq524375 Length=364 Score = 102 bits (112), Expect = 1e-16 Identities = 105/135 (78%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 174495 AATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCCGCAA-C 174553 || || |||||| |||||||||| |||||||||||||| ||||| | || | |||| | Sbjct 223 AACCGCCTTTACATCGGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACTGCAACC 282 Query 174554 TGTATGTTTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAATCCGTGA 174613 | ||||| ||||| || ||| | | |||||| || ||||||||||| || |||||||| Sbjct 283 TCCGTGTTT-ATTATTGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATCCGTGA 341 Query 174614 ACCAGTAGCTGGTTC 174628 || || |||| || Sbjct 342 GCCTGTTTCTGGCTC 356 >seq7860 Length=10955 Score = 102 bits (112), Expect = 1e-16 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 176124 CAACTTGGAGGGCTTTGGTCCTTTGTTGCTCTCCACGGTGCCTTCGCTCTGATTGGATTC 176183 ||| | || || || ||| | ||||||||||||||||| || || | || || || ||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 176184 ATGCTTCGTCAGTTTGAACTGGCAAGACTCATTGGTATCCGTCCCTACAACGCTATTGCA 176243 ||| | ||||| |||||||| || || || | || || || || || || ||| Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGACCTTATAATGCAATCGCA 6572 Query 176244 TTCAGTGGTCCTATCGCTGTATTTGTCAGTGTGTTTCTTCTATACCCACTAGGTCAATCT 176303 ||| || ||| || ||||| ||||| ||| || | | || ||||||||||| ||| Sbjct 6571 TTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTCT 6512 Query 176304 TCCTGGTTCTTTGCCCCCTCCTTTGGTGT 176332 ||||||||||| || |||||||| Sbjct 6511 GGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 724893861310200