Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_026928.1 Length=189418 Score E Sequences producing significant alignments: (Bits) Value seq7860 127 2e-24 seq524375 109 7e-19 seq345864 100 3e-16 seq13424 100 3e-16 >seq7860 Length=10955 Score = 127 bits (140), Expect = 2e-24 Identities = 174/239 (73%), Gaps = 3/239 (1%) Strand=Plus/Minus Query 179473 AGGGGAATTTCCAGCGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 179532 |||||| ||| | || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 6713 AGGGGATTTTACT-CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 6655 Query 179533 GTGCCTTCGCTCTCATTGGTTTCATGCTTAGGCAATTTGAACTTGCTCG-CCTGATTGGT 179591 | || || | || || ||||||||| | | ||||||||||||||||| ||| || Sbjct 6654 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTG-TTCAA 6596 Query 179592 ATCAGACCTTACAATGCGATTGCTTTTTCTGGTCCTATTGCTGTATTCGTCAGTGTTTTC 179651 | ||||||| ||||| || || || |||| ||| |||||||| || || ||| ||| Sbjct 6595 TTGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTC 6536 Query 179652 CTCATCTATCCTTTGGGACAGTCCTCTTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGC 179710 | || ||||| | || ||||| |||||| || ||||| |||||||| | ||| Sbjct 6535 TTGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTGGGGC 6477 >seq524375 Length=364 Score = 109 bits (120), Expect = 7e-19 Identities = 123/162 (76%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 177849 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177908 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 177909 ATGATTCCAACTCTGTTGGCAGCAACTATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 177967 ||||| || || || ||| | ||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 177968 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 178009 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq345864 Length=152 Score = 100 bits (110), Expect = 3e-16 Identities = 105/138 (76%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 179678 TTGGTTTTTCGCGCCGTCCTTTGGTGTCGCGGCGATCTTCAGGTTCTTGCTGTTCCTTCA 179737 ||||||||| || || ||||| || || || |||||| | ||| | |||| | || Sbjct 14 TTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCA 73 Query 179738 GGGTTTCCACAACTGGACGCTCAACCCCTTCCATATGATGGGAGTTGCTGGTATACTAGG 179797 |||||||| |||||||| || ||||| |||||||||||||| || |||||| || |||| Sbjct 74 AGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGG 133 Query 179798 AGGAGCACTGCTCAGTGC 179815 || || || || |||| Sbjct 134 AGCTGCTCTTCTTTGTGC 151 >seq13424 Length=38927 Score = 100 bits (110), Expect = 3e-16 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 178566 GGTCGTTTGATCTTCCAATATGCTTCATTCAACAACTCACGTTCACTGCACTTCTTCCTC 178625 || || |||||||||||||||||| ||||| || || ||||| | || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 178626 GCAGCATGGCCTGTAGTTGGAATCTGGTTCACCGCACTGGGCGTAAGCACCATGG 178680 || || ||||||||||| || |||||||||||||| | || | ||||| |||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 601828777645200