Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq345864 116 4e-21 seq524375 114 1e-20 seq4549 104 3e-17 seq13424 91.5 2e-13 seq5622 91.5 2e-13 >seq345864 Length=152 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 160343 GGTCAGTCCAGTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTG 160402 ||||| || |||||||||| ||||| ||||| || ||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 160403 TTGTTCCTTCAAGGATTTCACAACTGGACGCTTAACCCCTTCCATATGATGGGAGTTGCT 160462 ||||| | ||||| || || |||||||| || ||||| |||||||||||||| || ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 160463 GGTATACTAGGAGGAGCACTGCTCAGTGC 160491 ||| || |||||| || || || |||| Sbjct 123 GGTGTATTAGGAGCTGCTCTTCTTTGTGC 151 >seq524375 Length=364 Score = 114 bits (126), Expect = 1e-20 Identities = 124/162 (77%), Gaps = 2/162 (1%) Strand=Plus/Plus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||||| ||||| || || | |||||||| || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATC-TGTTTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || || ||| | |||||| | ||||| || | |||||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTC 158539 |||||||||||||| || |||||||| || || |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq4549 Length=62305 Score = 104 bits (114), Expect = 3e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 160583 ACTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCT 160642 |||||||| |||||||| || |||| ||| ||||| || ||||| | |||| ||||| Sbjct 53403 ACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCTTTGAGGTTGCTTTTTCC 53344 Query 160643 AACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCC 160702 | || | ||| | || || || || || ||||| || | | ||| | || | Sbjct 53343 GATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAACTGGTTTATGAATGAGG 53284 Query 160703 AGTATTGGCATTATTGGTCTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAAGAG 160762 | |||| || ||||||| |||| || || ||||| || || ||| | |||||| Sbjct 53283 GCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATGACTTCATTTTTCAAGAA 53224 Query 160763 ATTAGAGCAGCAGAAGATCCAGAATTTGAGACCTTCT 160799 || | |||||| ||||||| ||||||||||| |||| Sbjct 53223 ATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 159096 GGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTT 159155 || || |||||||||||||| ||| ||||| || || ||||| || || |||||||| Sbjct 6338 GGCCGATTGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTA 6279 Query 159156 GCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGC 159190 || || |||||||| || || |||||||||||||| Sbjct 6278 GCGGCTTGGCCTGTAGTAGGTATCTGGTTCACCGC 6244 >seq5622 Length=97820 Score = 91.5 bits (100), Expect = 2e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 160784 GAATTTGAGACCTTCTACACCAAGAACATCCTACTGAATGAAGGACTACGTGCATGGTTA 160843 ||||||||||| ||||||||||| || | || | |||||||| | |||| ||| | Sbjct 54974 GAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTTGGATG 54915 Query 160844 GCACCTGCCGACCAACCCCATGAGAACTTTATCTTCCCAGAAGAAGTTCTTCCTAGAGGC 160903 ||| || || ||||| ||||| ||| |||| ||||| || || ||||| || | || Sbjct 54914 GCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGA 54855 Query 160904 AACGCCCTTTAAT 160916 ||||| ||||||| Sbjct 54854 AACGCTCTTTAAT 54842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548662119163200