Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq7860 140 4e-28 seq345864 114 2e-20 seq5622 95.1 1e-14 >seq7860 Length=10955 Score = 140 bits (154), Expect = 4e-28 Identities = 171/232 (74%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 180271 AGGGGAATTTCCAACGGTGGTGCCAACTTGGGGGACTCTGGAATTTCGTGGCTCTCCACG 180330 |||||| ||| | || ||||| ||| | || || || |||| ||| || |||||||||| Sbjct 6713 AGGGGATTTTACT-CGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACG 6655 Query 180331 GTGCCTTCGCCCTAATTGGATTTATGCTACGCCAGTTTGAACTGGCACGTCTTATTGGTA 180390 | || || | ||||| || || ||| |||| || |||||||| || || | || Sbjct 6654 GCGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT 6595 Query 180391 TCCGTCCTTACAATGCTATTGCATTCTCTGGTCCTATCGCTGTATTTGTCAGCGTATTTC 180450 | || ||||| ||||| || |||||||||| ||| || ||||| ||||| ||||| Sbjct 6594 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCT 6535 Query 180451 TCATCTACCCACTGGGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGT 180502 | || || ||||| |||||||| ||||||||||||| || |||||| || Sbjct 6534 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGT 6483 >seq345864 Length=152 Score = 114 bits (126), Expect = 2e-20 Identities = 104/131 (79%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 180465 GGTCAGTCCAGTTGGTTCTTTGCTCCCTCTTTTGGGGTAGCAGCAATCTTTAGATTCCTA 180524 ||||| || ||||||| |||||||| |||||| || ||||||||||| | ||| | Sbjct 3 GGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATT 62 Query 180525 CTCTTTCTTCAGGGTTTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGAGTTGCT 180584 | ||| | || |||||||| |||||||| || ||||| |||||||||||||| || ||| Sbjct 63 TTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCT 122 Query 180585 GGTATACTAGG 180595 ||| || |||| Sbjct 123 GGTGTATTAGG 133 >seq5622 Length=97820 Score = 95.1 bits (104), Expect = 1e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 180901 ATCCTGAGTTCGAGACGTTCTACACCAAGAACATCCTATTGAATGAAGGACTACGTGCAT 180960 || |||| || ||||| ||||||||||| || | || || |||||||| | |||| | Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 180961 GGTTGGCACCTGCCGATCAACCACACGAAAACTTCATCTTCCCTGAAGAAGTTCTACCAA 181020 || ||||| || |||||||| || |||||| | || |||||||| || |||||||| Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 181021 GAGGTAACGC 181030 | || ||||| Sbjct 54859 GTGGAAACGC 54850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 606118974235200