Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq1776 141 1e-28 seq537914 107 3e-18 seq65591 100 4e-16 seq544639 86.0 9e-12 seq24333 86.0 9e-12 >seq1776 Length=16993 Score = 141 bits (156), Expect = 1e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||||| |||| | |||| ||||| |||| ||| || Sbjct 7728 TCCCCCTTGATCAACATAACGAGCAGTGTCATTAAACACTCGAAGCATAGGAACAATGCC 7787 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 ||| || | |||||||| ||| |||| || || ||| ||| || |||||| || ||| Sbjct 7788 ATTGGAACTCCCATTTGTCCCACAAATGTAGCTACCTGCTGCACGGATATTATGAACAGA 7847 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 ||||| |||||||| || ||| ||| | |||||| ||||| || ||| |||| Sbjct 7848 GAGACCAATTCCTCCAGCTGATTTGCTGATAACAGCACACTCCTTCAAGGTATCAAATAT 7907 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTA 69972 ||||| |||||||||||| ||||| | |||||| |||||| Sbjct 7908 TCCCTCAATGCTATCATCTTTCATGCACACAAGAAAGCAGCTA 7950 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 69489 CTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCC 69548 ||| ||||| ||| | | || | | ||| ||||| ||||||||| |||| |||| || Sbjct 7135 CTCCTTTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACC 7194 Query 69549 AGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAA 69608 ||| |||||||| || | ||| ||||| ||||| | | |||| || |||||| Sbjct 7195 GGGAGCCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAA 7254 Query 69609 TAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 ||||| || ||||||||||| | ||| ||||||| | || || ||||| Sbjct 7255 AAGATCAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq537914 Length=527 Score = 107 bits (118), Expect = 3e-18 Identities = 163/230 (71%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 69990 AGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATT 70049 |||||| |||||||| | |||||||| || ||||||||||| || ||| | || || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 70050 GTATGTTTCAATAGCTGATTCTATATCCCACTGATGAATTCCTATCGCGACACGCATCAA 70109 |||||||| ||||| || || ||||| || |||||||| | | || | |||||| Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTGTGAATTCCAACAGAAACCCTCATCAA 153 Query 70110 CATATGCTGAGGTCGTTCTAC--CGTTTTATTATTTATTTTCAACAGGTATGATTTTTCC 70167 ||| || ||||| | |||||| | ||| | | | ||||| ||||| || | || Sbjct 152 CATGTGTTGAGGCCTTTCTACAACCTTTCCT--TGGACCTTCAATAGGTAAGACCTCTCA 95 Query 70168 AGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 70217 || ||||| || ||||| || | || |||||||| || || || || Sbjct 94 AGGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq65591 Length=6549 Score = 100 bits (110), Expect = 4e-16 Identities = 344/531 (65%), Gaps = 4/531 (1%) Strand=Plus/Minus Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654 || || ||||| || |||||||| ||||| || || ||||| || | | | | Sbjct 3852 ACACGCTTCATGAAGAGATCGGGGATCCAGAGGGCGTAGAAGAGGTCGCGAGCACGAACC 3793 Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714 || || || || || || || ||||| || | | | ||||| ||||| || Sbjct 3792 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAAGCGAAGACATCAGCGTGCCAAGGC 3733 Query 69715 TCTAGATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCA 69774 || || || || || | | | || || || || || || ||||| || | ||||||||| Sbjct 3732 TCGAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCAACATATCTGGCA 3673 Query 69775 GTGTTATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAA 69834 ||||| || |||| | ||||| |||| || ||| || || |||| || || |||| Sbjct 3672 GTGTTGTTGAAGACACGGAGCATGGGAACAAGACCGTTCGAGGTACCGTTGGTACCAGCG 3613 Query 69835 ATATAACTTCCTCTTGCGCGAATATTACTAATAGAT-AGACCTATTCCTCCTGCCATTTT 69893 || ||| || | || ||||| | | | | | ||||| || || || || | || Sbjct 3612 ATGTAAGAGCCAGTGGCACGAAT-GCAGTGAGCGTTGAGACCAATACCACCAGCGTTCTT 3554 Query 69894 AGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCAT 69953 ||||| | || || || | ||||| || ||||| || || |||||| |||| Sbjct 3553 CGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCATCAATCGAATCATCCTTCAT 3494 Query 69954 GTTAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGG 70013 || | || || || || | ||| | || ||| || || | || | ||||| Sbjct 3493 GTCGATCAGGAAGCATGAAGCGAGCTGAGGCTGGGGAGTGCCGGCGCTGAACAGAGTAGG 3434 Query 70014 AGATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTAT 70073 || ||||| ||||| | || || | || ||||||||||| || || | || || Sbjct 3433 CGAGGCGTGGGTGAAGTACTTGAGCGACATCAAGTTGTATGTTTCGATGGCAGCCTCAAT 3374 Query 70074 ATCC-CACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTC 70123 ||| | | | || || || | || |||||||| | ||| ||||| |||| Sbjct 3373 GTCCTCGCCG-TGGATGCCAACAGCAACACGCATGATCATCTGCTGGGGTC 3324 >seq544639 Length=747 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||||||||| ||||||||||||||| ||| | || || |||||||| | Sbjct 269 GCAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAAAATGTCAA 210 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 || ||||| | || | |||||| ||||| ||||||||| Sbjct 209 ACCCGGCATCATTCCCCTCTTTTTAAGCCAGAATATGGCA 170 >seq24333 Length=53945 Score = 86.0 bits (94), Expect = 9e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 ||| || ||||||||||| ||||||||||||||| ||| | || || |||||||| | Sbjct 12460 GCAAGCAAAGTCACAATGGAGGCCCTCATCTCTAGAAATAAGCTCATTTGAAAATGTCAA 12401 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCA 39715 || ||||| | || | |||||| ||||| ||||||||| Sbjct 12400 ACCCGGCATCATTCCCCTCTTTTTAAGCCAGAATATGGCA 12361 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 682169859120600