Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq23076 114 1e-20 seq9269 100 2e-16 seq3985 98.7 8e-16 seq12300 86.0 5e-12 seq19785 82.4 6e-11 >seq23076 Length=20243 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | ||| |||| ||||| || | ||| || || ||||| |||||||| Sbjct 11692 CCTCCCCTCAATCGCAGGACCAAGTGCAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAG 11633 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | |||| |||| || | ||| ||||| ||| ||||||||||||| || || || || Sbjct 11632 AGCGTGCGACCGTCCTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCGGGTGGG 11573 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| || | | | || | |||||||| | || || Sbjct 11572 ATACCCTCCTTGTCTTGGATCTTGGCCTTGACGTTGTCGATAGTGTCTGACGACTCTACC 11513 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | || || ||||| || ||||||||||| |||||| Sbjct 11512 TCCAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCATA 11465 >seq9269 Length=22462 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | || | || ||||||||||| ||| Sbjct 15025 GTTGACTCCTTCTGGATGTTGTAGTCGGCCAAAGTCCGGCCATCCTCGAGCTGTTTTCCG 14966 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||| ||||| || ||||| || | ||||| || || |||||| ||| Sbjct 14965 GCGAAGATGAGGCGCTGCTGGTCCGGTGGAATGCCCTCCTTGTCTTGGATCTTAGCCTTC 14906 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | || | ||||| | | || || ||||| ||||| | ||||||||||| || Sbjct 14905 ACATTGTCGATGGTGTCAGATGACTCGACCTCTAGGGTTATGGTCTTGCCCGTCAGGGTC 14846 Query 27231 TTCACAAAGATTTGCATAGCTGC 27253 ||||| ||||| ||||| | ||| Sbjct 14845 TTCACGAAGATCTGCATGGTTGC 14823 >seq3985 Length=92670 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || || | || | ||| | || || || || || |||||||||||| Sbjct 25735 TGCCTCCCCTCAGCCTAAGCACGAGATGGAGGGTGGACTCCTTCTGGATATTGTAGTCGG 25676 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | |||| |||| |||||||| || |||||| | || || | ||| || ||||| | Sbjct 25675 CGAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCCGGTG 25616 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| ||||| ||||||| || | | | || | ||||||| || | Sbjct 25615 GGATTCCCTCCTTATCCTGGATCTTGGCCTTTACGTTGTCGATGGTGTCTGAACTCTCGA 25556 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||| || || || || || ||||||||||| Sbjct 25555 CCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATTTGCAT 25507 >seq12300 Length=44855 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || ||||| || ||||| ||| | | | || | |||||| Sbjct 13308 ACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAATCGGCAAGGGTTCGACCATCTTCG 13367 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 || || || || || | || | | ||| ||||| || || | |||||| ||||| | Sbjct 13368 AGTTGCTTGCCAGCAAAGATCAACCTCTGCTGATCTGGTGGGATACCCTCCTTATCCTGG 13427 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 |||||| || | | || | ||||| | | |||||||| | ||||| | ||| Sbjct 13428 ATCTTGGCCTTGACATTATCAATGGTGTCCGAGCTCTCAACTTCCAAGGTTATGGTTTTC 13487 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || ||||| ||||||||||||||| Sbjct 13488 CCGGTAAGGGTTTTGACAAAGATTTGCATA 13517 >seq19785 Length=119778 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| || | ||||| || | || | || || || || || || |||||||| Sbjct 21610 CCTCCTCGTAGCCGCAGAACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCCGAG 21669 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || ||||||||||||| || || || | || || ||||| ||||| || || Sbjct 21670 AGGGTCCGACCGTCTTCGAGCTGCTTGCCTGCAAAGATCAGGCGCTGCTGATCGGGTGGG 21729 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | |||||| || || ||||||| || | | || | ||||| || || || Sbjct 21730 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTGTCGATTGTGTCACTGCTCTCGACC 21789 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| || | ||||| ||||| || || || ||||| |||||| Sbjct 21790 TCGAGAGTGATCGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATA 21837 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422076094029480