Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq23651 95.1 4e-14 seq55560 93.3 1e-13 seq370110 86.0 2e-11 >seq23651 Length=24420 Score = 95.1 bits (104), Expect = 4e-14 Identities = 322/492 (65%), Gaps = 10/492 (2%) Strand=Plus/Plus Query 256134 AGCACGGACTGCGCAACTCGCAACGATTGGCGCCCATGCCAACCGCCAGCACCGCTCAAA 256193 ||||||| ||||||||||||| | |||| |||||||| |||||| || |||| | Sbjct 18721 AGCACGGCCTGCGCAACTCGCTCCTCCTGGCACCCATGCCTACCGCCTCGACGTCTCAGA 18780 Query 256194 TCCTGGGTAACGTGGAAAGCATCGAACCCCTGACTACCAACTTCTTCTCGCGCCGCGTTC 256253 ||||||| | || || |||| ||| ||| ||||| ||| | ||||||| || | Sbjct 18781 TCCTGGGCTTCAACGAGTGCTTCGAGCCCTACACTTCCAACATCTACACGCGCCGTGTGC 18840 Query 256254 GCTCCGGCGAGTTCGCCGTGGTGAACCAGTACTTGGTGGACGACTTGGTACGA-CTCGGT 256312 | || ||||| |||||||||| | || || || |||| ||| | ||| Sbjct 18841 TTGCTGGAGAGTTTCAGGTGGTGAACCCATGGCTGCTGCGTGAACTGGT-CGAGCAAGGT 18899 Query 256313 CTGTGGAACGAGAAGATGCAACAACGCATAATTCGGGC-CCGTGGGTCGGTGCAGAACAT 256371 ||||||||||| | ||| | | ||||| | ||| | | |||| ||||| |||||| | Sbjct 18900 CTGTGGAACGACACCATGAAGAACCGCATCA-TCGCACACGGTGGATCGGTTCAGAACGT 18958 Query 256372 TGAGCGCTTGCCGTTCCGCTTGCGCGAGGTATACCGCACGGTATGGGAGATGCCGCA-AC 256430 || | || | | | || | ||| || || |||||||| |||| | Sbjct 18959 GCCCGGCATCCCCGACAGGATCAAGAAGCTCTACAAGACTGTCTGGGAGATTTCGCAGAA 19018 Query 256431 GATTGTTGGTCGACTTGTGCGCAGCACGACAACCGTTTGTGGATCAGTCGCAAAGCCTCA 256490 || | ||||| || || | || | ||| | ||| || || |||| Sbjct 19019 GA-CCATCATCGACATGGCTGCCGACCGTGGTGCCTTTATCTGTCAATCACAGTCGCTCA 19077 Query 256491 ACCTCTACTTTCCGGTGCCCAACTTTAAACGCTTGACCAACGCACACTTTTACGGGTGGC 256550 || || || || ||| |||| |||| | ||||| ||||| ||||| || Sbjct 19078 ACATCCACCTTTCGGCTCCCACCTTTGGTCAGCTGACCTCGATGCACTTCTACGGCTG-- 19135 Query 256551 GAAAC--GGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCAGCGGCCGACCCGAT 256608 ||| | || || ||||| || || ||||||||||| |||||||| || ||| || | || Sbjct 19136 GAAGCGAGGACTCAAGACTGGTATCTACTACCTGCGTACCCGACCTGCTGCCAACGCCAT 19195 Query 256609 CCAATTCACCGT 256620 || |||||||| Sbjct 19196 TCAGTTCACCGT 19207 >seq55560 Length=14680 Score = 93.3 bits (102), Expect = 1e-13 Identities = 89/114 (78%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 443761 GCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAA 443820 || ||||||||||||||||| |||||||| | |||| |||| |||| || |||||| Sbjct 6465 GCTTCCATCTTCTGGTTGAAGAAGCGTGGTTTGATGCCCGGTTTGACTTTCTCTAACGAG 6524 Query 443821 CTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTACACC 443874 ||||| || |||||||| ||||| ||| ||||| ||||| |||| |||| Sbjct 6525 TTGATCTCGCGAGACGAGGGATTGCACACCGATTTCGCTTGTCTCCTCTTCACC 6578 >seq370110 Length=160 Score = 86.0 bits (94), Expect = 2e-11 Identities = 93/121 (77%), Gaps = 2/121 (2%) Strand=Plus/Plus Query 443690 AAATCTCAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAG 443749 ||||| || ||| | | |||||| || ||||| |||| ||||||||| | || || Sbjct 38 AAATC-CACCTTTGCCCTGCGACTCGTTGCTTTCGCTGCCGTCGAAGGAATCTTCTTCT- 95 Query 443750 CGGCAGCTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCT 443809 ||| | | || ||||||||||||||| |||| |||||||| || |||| ||||| |||| Sbjct 96 CGGGATCCTTCGCCTCCATCTTCTGGCTGAAGAAGCGTGGCCTCATGCCGGGTCTCACCT 155 Query 443810 T 443810 | Sbjct 156 T 156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1577104223437175