Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq34573 96.9 3e-15 >seq34573 Length=79373 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 34220 TTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCTGCTGTGG 34279 || || |||||||| ||||| | |||| ||||| ||||| | || ||||| ||||| Sbjct 21538 TTGCCTCTGCTGACCACGAAGAGGGTGTTCTGGAGAGGCGTCATGGAAGAGCTCTTGTGG 21597 Query 34280 TTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGAC 34339 ||| | || || |||| || ||| ||| | | || | | ||||||||| Sbjct 21598 TTCCTCAGAGGATCCACAAATGGCAATCTCCTCAGGGATCAAGGCATCCATATCTGGGAC 21657 Query 34340 GCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCA-TC-TCGGGAGGAGGGCG 34397 | | || || |||| || |||||| | |||| || || || ||| ||||| || | Sbjct 21658 GGCAATGGATCAAGAGAGTTCCTGGACTCGAGGGG--TCTCAGTCATCGAGAGGAAGGGG 21715 Query 34398 ACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| || || ||||| ||||| |||||||||||||| || || || Sbjct 21716 ACTTGGGACCTGTGTACGGCTTCCAATGGAGACACTTTGGAGCCGACTA 21764 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || |||||||||||||| ||||| ||||| || || |||||||| || ||||| Sbjct 21764 TAGTCGGCTCCAAAGTGTCTCCATTGGAAGCCGTACACAGGTCCCAAGTCCCCTTCCTCT 21705 Query 6959 CGA-GA-TGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCT 7016 ||| || || || |||| | |||||| || |||| || || | |||||||||| | Sbjct 21704 CGATGACTGAGA--CCCCTCGAGTCCAGGAACTCTCTTGATCCATTGCCGTCCCAGATAT 21647 Query 7017 TCACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCT 7076 | || | | ||| ||| || |||| || || | |||||||| |||| Sbjct 21646 GGATGCCTTGATCCCTGAGGAGATTGCCATTTGTGGATCCTCTGAGGAACCACAAGAGCT 21587 Query 7077 CCTCGACCACGCCCTTCCAGTACACACGTTTCGTCGTCAGCAGCGGAAA 7125 | || | ||||| ||||| |||| | ||||| |||||||| || || Sbjct 21586 CTTCCATGACGCCTCTCCAGAACACCCTCTTCGTGGTCAGCAGAGGCAA 21538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445169865718800