Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12300 105 5e-18 seq2836 100 2e-16 seq53772 91.5 1e-13 seq23076 87.8 1e-12 >seq12300 Length=44855 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || | ||||| ||| ||||| | || || || || || Sbjct 13060 ATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTCC 13001 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || ||||| || || || || |||||||| ||| |||| ||| | Sbjct 13000 GATACCATTGACAAT--GTTAAGGCTAAGATCCAAGACAAAGAGGGTATTCCCCCGGACC 12943 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || || || ||||| || | | | | ||| ||||||||| Sbjct 12942 AGCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACA 12883 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||||| ||| || |||||||||| |||| |||||||| || Sbjct 12882 ACATCCAAAAGGAGTCGACCCTGCATTTGGTGCTGCGATTGCGTGGTGG 12834 >seq2836 Length=35635 Score = 100 bits (110), Expect = 2e-16 Identities = 151/213 (71%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 ||||||||| ||||| || ||||||||||| || |||||| | || || || ||| | Sbjct 32199 AATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTCGAAGTTGAGAGCTC 32140 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || | || ||||| ||||| |||||| || || |||||| |||| || Sbjct 32139 TGATACAATTGACAAT--GTCAAGGCAAAAATTCAGGATAAGGAAGGTATTCCACCCGAC 32082 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || ||||| |||||||| | || || | | | ||| |||| ||| Sbjct 32081 CAGCAGAGGCTGATATTTGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCCGACTAC 32022 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTT 27999 |||||||| |||||| ||| | ||||||||| Sbjct 32021 AACATCCAGAAAGAGTCGACTCTTCATTTGGTT 31989 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||||||||| || || || || | || || |||||| | Sbjct 32426 ATGCAGATCTTTGTTAAAACTCTTACAGGTAAGACAATCACTTTGGAAGTTGAAAGCTCA 32367 Query 27850 GACGATGTACAATCG-----GTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 ||| ||||||| |||||| ||| ||| |||||||| ||| |||| | Sbjct 32366 GAC-----ACAATCGATAATGTCAAAGCAAAGATACAAGACAAAGAGGGTATTCCTCCAG 32312 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | ||||| | || || ||||| ||||| ||| | || || | || | ||| | || | Sbjct 32311 ATCAGCAGAGATTGATCTTTGCGGGAAAGCAACTTGAGGATGGTCGAACTTTGGCTGACT 32252 Query 27965 ACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| || |||||| ||| ||||||||||| | || | ||||| || Sbjct 32251 ACAACATTCAGAAAGAGTCCACCTTGCATTTGGTCCTCCGCCTCCGTGGTGG 32200 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| |||||||| ||||| || || || | || ||||| ||| | Sbjct 32882 ATGCAGATCTTTGTCAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 32823 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| ||||| || || | || || | Sbjct 32822 GATACAATTGATAAT--GTCAAAGCCAAAATTCAGGACAAGGAGGGAATCCCTCCAGACC 32765 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | || ||||| |||||||| ||||| || | || | ||| | ||||||| Sbjct 32764 AGCAGAGGCTGATCTTTGCTGGAAAACAGTTGGAGGATGGGCGTACTTTGGCTGATTACA 32705 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||| ||||| ||| | || |||||| | |||||| | || || Sbjct 32704 ACATCCAGAAAGAATCCACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 32656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 160/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| ||||||||||| ||||||||||| || ||| || |||| || || ||| | Sbjct 31971 AATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTC 31912 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 || || || | ||| |||||| ||| || || || ||||| |||| ||| Sbjct 31911 CGATACAATTGATAAT--GTCAAAGCAAAGATCCAAGATAAGGAAGGGATTCCTCCGGAT 31854 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTA 27965 ||||| || | || ||||| || || ||| | || || | || | |||| | ||||| Sbjct 31853 CAGCAGAGGCTCATCTTTGCAGGGAAGCAACTTGAGGATGGCCGTACTCTTG-CTGATTA 31795 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGC 28017 ||| || ||||| || || | ||| | ||| | || ||||||| ||| Sbjct 31794 CAATATTCAAAAGGAATCAACACTCCATCTTGTTCTCCGCCTGCGTGGTGGC 31743 >seq53772 Length=13107 Score = 91.5 bits (100), Expect = 1e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| || || || || |||||||| || ||||| || | | | | |||| ||| Sbjct 2520 GACCAGCAGCGATTGATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACCTTGAGTGAT 2461 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGG 28013 |||||||| || || ||||||||||||||| | || ||||||||||| || Sbjct 2460 TACAACATTCAGAAGGAGAGCACTTTGCATCTCGTCTTGCGTTTGCGAGG 2411 >seq23076 Length=20243 Score = 87.8 bits (96), Expect = 1e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || |||||||| | || ||||| ||||| || |||| |||| ||| | | |||| ||| Sbjct 11352 GATCAGCAACGACTGATCTTTGCTGGAAAGCAGCTGGAGGACGGACGTACCCTGTCGGAT 11411 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||||||||| || |||||||| ||||| | ||| | ||| |||| || || Sbjct 11412 TACAACATCCAGAAGGAGAGCACCTTGCACCTCGTTCTCCGTCTGCGAGGTGG 11464 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 353468704355205