Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq18120 95.1 1e-14 seq23076 93.3 4e-14 seq12300 87.8 2e-12 >seq18120 Length=99179 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || || | ||| ||||| |||| || ||||| ||||| || || Sbjct 92557 CTCCTTCTGGATGTTGTAGTCCGAAAGGGTTCGGCCGTCCTCGAGCTGCTTGCCGGCGAA 92498 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | ||| | | ||| |||||| ||| || |||| ||| Sbjct 92497 GATCAGTCGCTGCTGGTCAGGGGGAATACCCTCCTTGTCCTGGATCTTGGCCTTGA-CGT 92439 Query 39213 CG-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 | | | || ||| |||||||| || | ||||| | || ||||| || || || | Sbjct 92438 TGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATCGTCTTCCCCGTGAGGGTCTTGA 92379 Query 39272 CAAAGATTTGCATC 39285 |||||||||||||| Sbjct 92378 CAAAGATTTGCATC 92365 >seq23076 Length=20243 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 ||||| || || || | ||||| || || || ||||| || || || || || || | Sbjct 11692 CCTCCCCTCAATCGCAGGACCAAGTGCAGGGTACTCTCCTTCTGAATGTTGTAGTCAGAG 11633 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || |||| || | ||| || || || || || |||||||||||||||| || Sbjct 11632 AGCGTGCGACCGTCCTCCAACTGCTTACCAGCGAAAATGAGACGCTGCTGGTCGGGTGGG 11573 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATCGCTCGACTCCAC 39236 | | ||| ||||| ||| || |||| ||| | | | || || |||||| || Sbjct 11572 ATACCCTCCTTGTCTTGGATCTTGGCCTTGA-CGTTGTCGATAGTGTCTGACGACTCTAC 11514 Query 39237 GTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| ||||| | ||||| ||||| || || |||||||| ||||| Sbjct 11513 CTCCAGAGTGATCGTCTTTCCGGTCAGGGTCTTCACAAAGATCTGCAT 11466 >seq12300 Length=44855 Score = 87.8 bits (96), Expect = 2e-12 Identities = 155/222 (70%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||||| | ||||| ||| || || ||| || || ||||| ||||| ||||| || | Sbjct 12615 AAGCGCAGCACCAGATGAAGGGTAGACTCCTTCTGAATATTGTAATCAGCAAGGGTCCTC 12674 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTC-GGTGGGCACGCTCTC 39185 | || |||||||| || || ||||| ||||| | |||||||| |||||| | || ||| Sbjct 12675 CCATCTTCAAGCTGCTTTCCTGCAAAGATAAGCCTTTGCTGGTCTGGTGGG-ATGCCCTC 12733 Query 39186 TTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGAC---TCCACGTCCAC 39242 |||||| || ||| |||| | | | ||||| ||| || || |||| Sbjct 12734 TTTGTCTTGTATCTTCGCCTTGACATTGTCAATAGTATC---CGAACTTTCAACCTCCAA 12790 Query 39243 CGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||||||||||| || || ||||| || ||||| Sbjct 12791 GGTTATGGTTTTTCCCGTCAAAGTCTTCACAAAAATCTGCAT 12832 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426656276958395