Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2836 123 2e-23 seq12300 104 2e-17 seq4858 100 2e-16 seq19785 95.1 8e-15 seq418028 86.0 4e-12 seq18120 86.0 4e-12 seq8213 86.0 4e-12 >seq2836 Length=35635 Score = 123 bits (136), Expect = 2e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || |||||||| || || || || || |||||| | |||||||| | | Sbjct 32426 ATGCAGATCTTTGTTAAAACTCTTACAGGTAAGACAATCACTTTGGAAGTTGAAAGCTCA 32367 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | ||| |||| | | |||||||| ||| | || |||||||| Sbjct 32366 GACACAATCGATAATGTCAAAGCAAAGA-TACAAGACAAAGAGGGTATTCCTCCAGATCA 32308 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || ||||| || || | || ||||| | || ||||| Sbjct 32307 GCAGAGATTGATCTTTGCGGGAAAGCAACTTGAGGATGGTCGAACTTTGGCTGACTACAA 32248 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||||||||| || ||||| || Sbjct 32247 CATTCAGAAAGAGTCCACCTTGCATTTGGT 32218 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| || || ||||| || || || || || || || |||||||||||||| | | Sbjct 32199 AATGCAAATCTTTGTTAAGACTCTTACTGGCAAGACTATTACTCTCGAAGTTGAGAGCTC 32140 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | || | ||||||| || || |||||| | || || || | Sbjct 32139 TGATACAATTGACAATGTCAAGGC-AAAAATTCAGGATAAGGAAGGTATTCCACCCGACC 32081 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | |||||||| || ||||| || || || | | ||||| | ||| |||| Sbjct 32080 AGCAGAGGCTGATATTTGCTGGAAAACAGCTCGAGGATGGCAGGACTTTGGCCGACTACA 32021 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || |||||||| || | ||||| ||| | ||| | || || ||| Sbjct 32020 ACATCCAGAAAGAGTCGACTCTTCATTTGGTTCTCAGGCTTCGTGGTGGA 31971 Score = 109 bits (120), Expect = 4e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || || ||||| ||||| || || ||||| || ||||| | | Sbjct 32654 ATGCAGATTTTTGTCAAGACACTCACTGGAAAGACTATTACTCTTGAGGTTGAGAGCTCT 32595 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || |||||| || ||||||||||| | || |||||||| Sbjct 32594 GATACCATAGATAATGTGAAGGCAAAAA-TTCAGGACAAAGAAGGAATTCCCCCAGATCA 32536 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | |||| || || || || || || || || | || ||||| | ||||||||| Sbjct 32535 GCAGAGGCTAATTTTCGCTGGAAAGCAGCTTGAGGATGGCCGAACTTTGGCCGATTACAA 32476 Query 23790 CATACAAAAAGAGTCCACA 23808 ||| || || ||||| ||| Sbjct 32475 CATTCAGAAGGAGTCTACA 32457 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || ||||| ||||| ||||| || || |||||||| || || | | Sbjct 32882 ATGCAGATCTTTGTCAAAACTCTCACTGGAAAGACCATAACTCTCGAGGTCGAGAGCTCT 32823 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| | ||| | |||| || ||||| || || | || ||||| || Sbjct 32822 GATACAATTGATAATGTCAAAGCCAAAA-TTCAGGACAAGGAGGGAATCCCTCCAGACCA 32764 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | || ||||| || ||||| |||| || | || ||||| | |||||||| Sbjct 32763 GCAGAGGCTGATCTTTGCTGGAAAACAGTTGGAGGATGGGCGTACTTTGGCTGATTACAA 32704 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || ||||| ||||| | || || ||| | | ||| |||| || Sbjct 32703 CATCCAGAAAGAATCCACCCTCCACTTGGTTCTTCGTTTGAGAGGTGG 32656 Score = 82.4 bits (90), Expect = 5e-11 Identities = 147/212 (69%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| || || || || || ||||| || ||||| || || || || | | Sbjct 31971 AATGCAGATTTTTGTGAAGACTCTTACTGGAAAGACTATCACCCTTGAGGTGGAGAGCTC 31912 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 || || |||| ||| | ||| | ||| || || || ||||| | || || |||| Sbjct 31911 CGATACAATTGATAATGTCAAAGC-AAAGATCCAAGATAAGGAAGGGATTCCTCCGGATC 31853 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | ||| | | || ||||| || || ||||| || || | || ||| | | ||||||| Sbjct 31852 AGCAGAGGCTCATCTTTGCAGGGAAGCAACTTGAGGATGGCCGTACTCTTGCTGATTACA 31793 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTT 23820 | || ||||| || || ||| | ||| | ||| Sbjct 31792 ATATTCAAAAGGAATCAACACTCCATCTTGTT 31761 >seq12300 Length=44855 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| ||| | || |||||||| || ||| | || ||||| | Sbjct 13060 ATGCAGATATTTGTTAAGACCTTGACTGGAAAAACCATTACTTTGGAGGTTGAGAGTTCC 13001 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || |||| ||| |||| | || | | |||||||| ||| | || || || || Sbjct 13000 GATACCATTGACAATGTTAAGGCTAAGA-TCCAAGACAAAGAGGGTATTCCCCCGGACCA 12942 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| || || || ||||||| | | | || |||| ||||||||| Sbjct 12941 GCAGAGGTTGATTTTTGCTGGTAAGCAGTTGGAAGATGGAAGGACCTTAGCCGATTACAA 12882 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| ||||| ||||| || | ||||| || | | ||||| || ||| Sbjct 12881 CATCCAAAAGGAGTCGACCCTGCATTTGGTGCTGCGATTGCGTGGTGGA 12833 Score = 102 bits (112), Expect = 5e-17 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || |||||||| || || ||||| || || | |||||||| | || Sbjct 13516 ATGCAAATCTTTGTCAAAACCCTTACCGGGAAAACCATAACCTTGGAAGTTGAGAGCTCG 13457 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| ||| | || | || | | || || || ||| | || |||||||| Sbjct 13456 GACACCATTGATAATGTCAAGGCCAAGA-TCCAGGATAAGGAGGGTATCCCACCAGATCA 13398 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| ||||| ||||| ||||| | || || | | ||||||||| Sbjct 13397 GCAGAGGTTGATCTTTGCTGGCAAGCAACTCGAAGATGGTCGAACCCTTGCCGATTACAA 13338 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| ||||| || ||||| Sbjct 13337 CATCCAAAAGGAATCCAC 13320 >seq4858 Length=21104 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| ||||| |||||||| || || || || || || ||||| || || | Sbjct 11434 AAGATGCAGATCTTCGTGAAAACCCTAACCGGTAAGACCATAACCCTCGAGGTCGAGAGC 11493 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| || || ||||||||||| | || || ||| Sbjct 11494 TCCGACACCATCGATAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGAT 11553 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||||| | || || |||||||| || || ||||||| ||||| | | ||| ||| Sbjct 11554 CAGCAGCGACTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTCGCCGACTAC 11613 Query 23788 AACATACAAAAAGAGTCCAC 23807 ||||| || || ||||| || Sbjct 11614 AACATCCAGAAGGAGTCGAC 11633 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| |||||||| || || || || ||||||||||| || || | | Sbjct 11665 ATGCAGATCTTCGTCAAAACCCTAACCGGGAAGACCATCACTCTCGAGGTCGAGAGCTCT 11724 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| ||||| | || || ||||| Sbjct 11725 GACACCATCGACAACGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCTCCGGATCAG 11784 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || || || ||| |||| |||| ||||| | | |||||| ||| Sbjct 11785 CAGCGCCTGATCTTCGCTGGGAAGCAATTGGAGGACGGGCGCACGCTCGCCGATTATAAC 11844 Query 23791 ATACAAAAAGAGTCCACATTACAT 23814 || || || ||||| || || ||| Sbjct 11845 ATTCAGAAGGAGTCGACCTTGCAT 11868 >seq19785 Length=119778 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||||||||| || || || Sbjct 21836 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACTCTCGAGGTCGAGAGCAGT 21777 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || ||| | || || ||||| Sbjct 21776 GACACAATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAGGGTATCCCACCCGATCA 21718 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| ||||| || || ||||||| || || | || ||||| Sbjct 21717 GCAGCGCCTGATCTTTGCAGGCAAGCAGCTCGAAGACGGTCGGACCCTCTCGGACTACAA 21658 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||| || || ||||| || | || | ||| | || | ||||||||| Sbjct 21657 CATCCAGAAGGAGTCGACTCTCCACCTCGTTCTGCGGCTACGAGGAGGA 21609 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||||||||| || || || Sbjct 22064 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACTCTCGAGGTCGAGAGCAGT 22005 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || || || || Sbjct 22004 GACACAATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 21946 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||||| | || || |||||||| || || || || | || | |||| | || ||| Sbjct 21945 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCG--GACTAC 21888 Query 23788 AACATACAAAAAGAGTCCACA 23808 ||||| ||||| ||| |||| Sbjct 21887 AACATCCAAAAGGAGAGCACA 21867 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||||||||| || || || Sbjct 22292 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACTCTCGAGGTCGAGAGCAGT 22233 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || || || || Sbjct 22232 GACACAATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 22174 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||||| | || || |||||||| || || || || | || | |||| | || ||| Sbjct 22173 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCG--GACTAC 22116 Query 23788 AACATACAAAAAGAGTCCACA 23808 ||||| ||||| ||| |||| Sbjct 22115 AACATCCAAAAGGAGAGCACA 22095 Score = 84.2 bits (92), Expect = 1e-11 Identities = 142/201 (71%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| || || || |||||||||||||| || || || Sbjct 22520 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACGATCACTCTCGAGGTCGAGAGCAGT 22461 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| ||||| | || || || || Sbjct 22460 GACACAATCGACAATGTCAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCTCCTGACCA 22402 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTAC 23787 |||||| | || || |||||||| || || || || | || | |||| | || ||| Sbjct 22401 GCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGGACCCTTTCG--GACTAC 22344 Query 23788 AACATACAAAAAGAGTCCACA 23808 ||||| ||||| ||| |||| Sbjct 22343 AACATCCAAAAGGAGAGCACA 22323 >seq418028 Length=182 Score = 86.0 bits (94), Expect = 4e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 23614 CAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACGGAC 23673 ||||| ||||| |||||||| || || || || || || ||||| || || | | ||| Sbjct 182 CAGATCTTCGTGAAAACCCTAACCGGTAAGACCATAACCCTCGAGGTCGAGAGCTCCGAC 123 Query 23674 ACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAG 23733 || | || | |||| || || ||||||||||| | || || ||||| ||| Sbjct 122 ACCATCGATAACGTAAAGGCCAAGATCCAGGACAAAGAAGGCATCCCTCCCGATCAGCAG 63 Query 23734 CGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAACATA 23793 || | || || |||||||| || || ||||||| ||||| | | ||| |||||||| Sbjct 62 CGACTCATCTTCGCCGGCAAGCAGCTTGAAGACGGTCGCACCCTCGCCGACTACAACATC 3 Query 23794 CA 23795 || Sbjct 2 CA 1 >seq18120 Length=99179 Score = 86.0 bits (94), Expect = 4e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || || || || ||||||||||| || |||||||| ||||| || || || | Sbjct 92366 ATGCAAATCTTTGTCAAGACCCTCACGGGGAAGACGATCACCCTCGAGGTGGAGTCTTCC 92425 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || ||||| || ||| | || || || || Sbjct 92426 GACACCATTGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATTCCCCCTGACCAG 92485 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACG--CACTTTAGGCGATTACA 23788 ||||| | || || |||||||| || || || |||| || | |||| | || |||| Sbjct 92486 CAGCGACTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGAACCCTTTCG--GACTACA 92543 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || || ||||| || | || | || | | ||||||||||| Sbjct 92544 ACATCCAGAAGGAGTCGACTCTCCACCTTGTGCTTCGTCTGCGAGGAGGA 92593 >seq8213 Length=36447 Score = 86.0 bits (94), Expect = 4e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 23704 GACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAA 23763 ||||| |||||| | || ||||| || ||| | | || ||||| || || ||| ||||| Sbjct 19355 GACAAGGAAGGTATCCCTCCAGACCAGCAGAGACTGATTTTTGCTGGTAAGCAATTGGAA 19296 Query 23764 GACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCACATTACATTTAGTTTTA 23823 || | || ||| | | ||||||||||| ||||| ||||| ||| | || ||||||| Sbjct 19295 GATGGTCGAACTCTTGCTGATTACAACATCCAAAAGGAGTCGACACTTCACCTAGTTTTG 19236 Query 23824 AGGTTGCGAGGAGGA 23838 ||| | | |||||| Sbjct 19235 AGGCTTAGGGGAGGA 19221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 335735990572820