Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq25376 89.7 4e-13 seq2580 82.4 6e-11 >seq25376 Length=12287 Score = 89.7 bits (98), Expect = 4e-13 Identities = 369/575 (64%), Gaps = 9/575 (2%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| || || || || | || ||||||| || | |||||||| || || ||||| || Sbjct 9943 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTC-GCGAGATCAGTTCATTGGAGAACGTCAA 9885 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAG 4664 || |||||||| |||| |||||| ||||||||||| ||| | || | ||| || ||| Sbjct 9884 GCCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGAGCAGAAACT--CCCCGAGAAG 9827 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || || || ||| || || || || ||| | || || || | | | | Sbjct 9826 AAGATCCCCTCGACGCAAGCGAAGGCAAC-GATCCGCTCCGCAA--AGGTCTCGGAGCCG 9770 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| | ||||| | ||| ||||| ||||| || | || | || ||| Sbjct 9769 TCGATCCAGCGGAGGGCCCACTGAGCCTTTTTGGCCACGCAAGGGACGGTCTCGATTGCG 9710 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 | || | | || || | | || | || || || || | | ||||| ||| Sbjct 9709 TGGAACAGGCGGTTCTTCTCGACCGAATCCTTGATGTAGGTCTCAAGCAAGAGGCTGTAC 9650 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTGTT 4904 || || || || || || || || || ||||| || || || ||| | ||||| | Sbjct 9649 ATCTCGGAGTGGATGTTCTCAATGGCGATCTGGAAGCCATAGAAGGCGCGTGCTTCGGCG 9590 Query 4905 ACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCT 4964 || || || || || || | | | | ||| || || || ||||| ||| Sbjct 9589 ACCTGGACCTCCTTCATGAAGCGGCCGCCCAGGTTCTCCAAAACGATGCCGTCGGAGGCG 9530 Query 4965 GCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAG 5024 || || || || | || || | || |||| | ||||| || | || |||| |||| Sbjct 9529 GCGAAGAAGGCGAGCACGTGGGTGATGAAGTGGCGCTCGTCGGGGGTTAGGTTTTCCCAG 9470 Query 5025 TGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTT 5084 ||| | | || | | | |||||| || || | ||||| || || || || || || Sbjct 9469 TGGCGGAGGTCCTGGGAGAGATCAACCTCCTCCGCGGTCCAGAAGGAAGCCTCGGCCTTC 9410 Query 5085 TTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||||| ||| || || || ||||| ||||| Sbjct 9409 TTGTACATTTCCCAGATCTCCGGGTACTGGATCGG 9375 >seq2580 Length=28588 Score = 82.4 bits (90), Expect = 6e-11 Identities = 102/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 ||||| || || || || | || ||||||| || | |||||||| || || ||||| || Sbjct 12064 CACGCGAAGTCGCAGTGGAGGCCCTCGTCTC-GCGAGATCAGTTCATTGGAGAACGTCAA 12006 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATAT--AGCGGCAAATGACCCAGAAAAG 4664 || |||||||| |||| |||||| ||||||||||| ||| | || | ||| || ||| Sbjct 12005 GCCAGGCATTAACCCTCGCTTTTTTAGCCAAAATATTGAGCAGAAACT--CCCCGAGAAG 11948 Query 4665 AATATGCCTTCTACG 4679 || || || || ||| Sbjct 11947 AAGATCCCCTCGACG 11933 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424177066212695