Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq34573 147 2e-30 seq511598 127 2e-24 seq55281 91.5 1e-13 >seq34573 Length=79373 Score = 147 bits (162), Expect = 2e-30 Identities = 182/249 (73%), Gaps = 0/249 (0%) Strand=Plus/Minus Query 27477 GTAGTCTACCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACAC 27536 ||||||| || | | ||||||||| || ||||| || || ||||||||||| |||||||| Sbjct 21786 GTAGTCTCCCTTGAAGTCCGTGTAGTCGGCTCCAAAGTGTCTCCATTGGAAGCCGTACAC 21727 Query 27537 CGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGA 27596 ||||||| ||| || || || | || || |||||| ||||| || ||||| || Sbjct 21726 AGGTCCCAAGTCCCCTTCCTCTCGATGACTGAGACCCCTCGAGTCCAGGAACTCTCTTGA 21667 Query 27597 ACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 || ||| |||||||||| | | || | || ||| ||| |||||||| || Sbjct 21666 TCCATTGCCGTCCCAGATATGGATGCCTTGATCCCTGAGGAGATTGCCATTTGTGGATCC 21607 Query 27657 TCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 27716 ||||| |||||||| ||||| |||| |||| | |||| || |||||||| || || || Sbjct 21606 TCTGAGGAACCACAAGAGCTCTTCCATGACGCCTCTCCAGAACACCCTCTTCGTGGTCAG 21547 Query 27717 GAGGGGAAA 27725 || || || Sbjct 21546 CAGAGGCAA 21538 >seq511598 Length=303 Score = 127 bits (140), Expect = 2e-24 Identities = 193/271 (71%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 27454 AGCTGATCCACCCCCATCCCCGAGTAGTCTACCCTCATG--TCCGTGTACTCTGCTCCGA 27511 ||||| || || ||| | | | ||||||| || || || || || ||||| || |||| Sbjct 278 AGCTGGTCGACGCCCTTGCTCTGGTAGTCT-CCGTC-TGCATCGGTATACTCGGCACCGA 221 Query 27512 AATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGC 27571 |||| ||||| ||||| ||||| || |||||||| || || ||| | ||||| | | Sbjct 220 AATGTCTCCACTGGAAGCCGTAGACGGGTCCCAGATCACCTTCTCTGCGGTGCTGCAGTC 161 Query 27572 CCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGG 27631 ||||| | | |||| | |||| || ||| |||||||||| | | | || | Sbjct 160 CCCTCGACTTGAGAAAGGCCTTGGATCCATTGCCGTCCCAGATGTGAATGTCTCGGTCTG 101 Query 27632 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGACGGCCT 27691 || ||||||| | |||| | || ||||||||||||||||||||||| ||| | Sbjct 100 TCAGGACTTTGGAATCTGTGCAGCCAGCGACGAACCACAGCAGCTCCTCCATGACTCCTC 41 Query 27692 TCCAAAAGACCCTCTTGGTCGTGAGGAGGGG 27722 ||||||||| | ||| ||||| | |||||| Sbjct 40 GCCAAAAGACTCGCTTCGTCGTCAAGAGGGG 10 >seq55281 Length=2393 Score = 91.5 bits (100), Expect = 1e-13 Identities = 110/147 (75%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 27133 TGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGT-GGAC 27191 |||||| | ||||| |||||||||||| |||||| || |||||||||| ||| ||| Sbjct 312 TGAGTCATGAGCGGCTCCACGTGATCCTTGTAGACATGCGCGTCTCCCA-TTTGTAGGAT 370 Query 27192 AAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCT 27251 |||||| ||||| ||||||| || || ||||||| || | || |||||| Sbjct 371 AAACTCGTGAGGTTCAGTGTCGGTGACATGGGCGATCATGTGTGTCAACAGCGAGTAGGA 430 Query 27252 GGCGATGTTAAAGGGTACCCCGAGCCC 27278 |||||||| |||||||| || || || Sbjct 431 AGCGATGTTGAAGGGTACGCCTAGTCC 457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 169/247 (68%), Gaps = 2/247 (1%) Strand=Plus/Plus Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 |||||||| |||| || ||| || || | || ||||||||| |||| || | | Sbjct 650 GGGTTCCAAGCGCTCATGATTATCCGTCGATCCGTCGGGTTGTTCTTGATCTTATCGATG 709 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTACC-CTCATGTCCGTGTACTC 27503 | | |||| |||||||||||| || | || || || | || |||| ||||| Sbjct 710 ACCTGCTGCAACTGATCCACCCCTTGACCAGTATAATCGTCCTCGCACGTCCC-GTACTT 768 Query 27504 TGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 27563 ||| |||||||| ||||||||||| ||||| || || || || ||||| || | || Sbjct 769 TGCCCCGAAATGTCTCCATTGGAATCCGTAGACGGGACCGAGATCTCCGACTCGTCGATG 828 Query 27564 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 27623 ||| || ||||||||| | || | || ||||| | ||||| ||| || || Sbjct 829 ACCGAGCCCGATCTTGTCCAGGTATTCACGAGATCCGTTCCCTTCCCAAATCCCAACTCC 888 Query 27624 CTTCTCG 27630 ||| ||| Sbjct 889 CTTGTCG 895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 367021723098365