Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq507837 131 2e-25 seq1776 125 1e-23 seq531702 96.9 5e-15 seq58770 91.5 2e-13 seq24333 87.8 2e-12 seq49730 84.2 3e-11 >seq507837 Length=291 Score = 131 bits (144), Expect = 2e-25 Identities = 203/290 (70%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 |||||||| |||||||| | ||||||||||| | | | ||||| ||||| ||| Sbjct 290 GGGCATTCCGAGGGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAG 231 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 |||||||| ||||| || || || || ||||| | || |||||| ||||| Sbjct 230 AGATCAGGGATCCAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGG 171 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 ||||| | |||||||| ||||| | || || || |||||||| || | || || || Sbjct 170 TTCTTCCTGAGATCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCA 111 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | || ||||| || ||||| || || || | |||| || ||||| || || ||| Sbjct 110 AAGGCACCTGGTCGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACT 51 Query 78198 CTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATA 78247 | | ||| || | ||| ||||| || ||||| ||||||| ||| || Sbjct 50 CGGAGCATGGGTACAATTCCGTTGGAGACACCATTGGTTCCAGCAATGTA 1 >seq1776 Length=16993 Score = 125 bits (138), Expect = 1e-23 Identities = 114/144 (79%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 77924 TTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCACATCAATGA 77983 ||||||||| ||||||||| |||| |||| || || ||||||||||| | ||| || Sbjct 7162 TTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAGCCTCATTTGGGCAAAACAAAGA 7221 Query 77984 CCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAA 78043 ||| | ||||| | | |||| || |||||| |||||||||||||| ||||||| ||| Sbjct 7222 CCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGATCAGGTATCCAAAGAGCAAAAAA 7281 Query 78044 TAGATCTCGGGTTCTATGTTCTTC 78067 ||||||||| | || ||| ||||| Sbjct 7282 TAGATCTCGAGCTCGATGCTCTTC 7305 >seq531702 Length=428 Score = 96.9 bits (106), Expect = 5e-15 Identities = 117/157 (75%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 77897 CTCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCC 77956 ||||||||||||||||| || | |||||||| || |||||| ||| |||| || Sbjct 203 CTCTCTTTCATATTGAGAGTACAATTTCTCAAATTCTTCACCCCAACAATCTGCCAAACC 262 Query 77957 AGGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTT-AACTCGTTTCATAA 78015 || | ||| | || || | ||||||||| || |||| | | || |||| || ||| | Sbjct 263 TGGAGACTCACTAGGACAAAACAATGACCATTCTCCAT-TACTTTGGACTCTTTCCATGA 321 Query 78016 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 78052 |||||||||| | ||| |||||| ||||||||| || Sbjct 322 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCCCG 358 >seq58770 Length=9062 Score = 91.5 bits (100), Expect = 2e-13 Identities = 185/272 (68%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 78142 CTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCA 78201 ||||||| | || || || |||||||| | |||| ||||| | |||| |||||| Sbjct 6477 CTCCAGGCCTCTTGTTTCCACCCTGATCGACGTATCGAGCGGTAGCGTCATAAGCTCTCA 6536 Query 78202 ACATTGGAATAATACCGTTAGATGTT-CCATTTGTTCCAGAAATATAACTTCCACTTGCG 78260 |||| || | || |||||| ||| || || ||||| | |||||||| || | || Sbjct 6537 ACATGGGTACGATTCCGTTAC-TGTAACCGTTCGTTCCGGCGATATAACTACCCTTGGCT 6595 Query 78261 CGAATATTACTAATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGT 78320 ||||| || |||| | || ||||| || || |||| || || | || || Sbjct 6596 CGAATGTTGTGAATGTTAAGACCGATTCCACCGGCGGTCTTGGAGATCATCGCACATGTC 6655 Query 78321 TTCAATGTATCGTAGATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTA 78380 ||||| ||||||||||| |||||||| ||| || ||||| || | || || | Sbjct 6656 TTCAAGGTATCGTAGATTCCCTCTATCGAGTCGTCTTTCATGGCAACCAAGAAGCAAGAA 6715 Query 78381 GACATTTGATGATGAACAGTTCCTGCATTAAA 78412 |||| |||| | ||| ||| || || || || Sbjct 6716 GACAATTGAGGGTGAGGAGTACCGGCGTTGAA 6747 >seq24333 Length=53945 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 48512 AAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATAC 48571 ||||| | ||||||||||||| ||| || |||||| || ||||||||||| | ||| Sbjct 10918 AAATCTTGCAGCCAAATTCTCCAATACAATCCCATCAGATGCTGCAAAAAATGCCAGTAC 10859 Query 48572 ATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 48631 ||| |||| ||| |||| || | || ||| || | ||| | |||| ||| | || Sbjct 10858 ATGGCTAATGAAAAATTTCTCTGAGTCAGACAGATTTTCCCACTGCTTGACATCCTGGGA 10799 Query 48632 TATATCTACTTCTTCAGCTGT 48652 || ||| || ||||||||||| Sbjct 10798 TAGATCAACCTCTTCAGCTGT 10778 >seq49730 Length=2875 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 77142 AATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 77201 || ||||| ||| |||| ||||| |||||||||||| | | | ||||||||||| | | Sbjct 747 AAAACTCTGCGACTGTATATATTGGAGGTATATGGTTCAAAACACTCATTGTTTCCAAGA 688 Query 77202 ATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAAC-TATTTCTGAGACCATG 77260 || || || |||||||| |||||||| | || ||| || | |||||| | ||||| Sbjct 687 ATCTGGCTGGTGGAAGCAGTCGGCATAGG-GGCAACAAGAAGCGAATTTCTAACACCAT- 630 Query 77261 TGTTCTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCC 77318 | || ||| | |||| | ||| ||||| ||||| | | ||||||| ||| || Sbjct 629 TCTT-GGATATCATCTCCCTAAGACCATTCCAGTCCCACCGGTTTGAAGGTGTTACACCC 571 Query 77319 CAAAGATCGTATTGTAGAATTCC 77341 || | || || |||||||| Sbjct 570 CACATGTCTGGCTGAAGAATTCC 548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 689876323365600