Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq507837 127 3e-24 seq1776 120 4e-22 seq65591 118 2e-21 seq537914 109 8e-19 seq531702 105 9e-18 seq534550 89.7 7e-13 seq49730 84.2 3e-11 seq24333 84.2 3e-11 >seq507837 Length=291 Score = 127 bits (140), Expect = 3e-24 Identities = 195/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 76565 GGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATC 76624 || ||||| | ||||| ||||| | | | || || ||||| ||||||||||| ||| Sbjct 278 GGGCACATGAGAGACCAGTCACCGTTCTGTTCGACTCGCTTCATGAAGAGATCAGGGATC 219 Query 76625 CATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGA 76684 || || || || || ||||| | || |||||| ||||| ||||| | ||| Sbjct 218 CAGAGGGCGTAGAAGAGTTCTCGAGCTCGGACTTCTTCCTTTCCGTGGTTCTTCCTGAGA 159 Query 76685 TCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGT 76744 || |||||||| | || || || |||||||| || | || || || | |||| ||| Sbjct 158 TCGAGGAACTCGAAGATGTCCGAGTGCCATGGCTCGACGTAGATGGCAAAGGCACCTGGT 99 Query 76745 CGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGA 76804 || || ||||| || || || | |||| |||||||| || || |||| | ||| || Sbjct 98 CGCTTGTTACCACCTTGGTCGACGTATCGAGCAGTGTTGTTGTAGACTCGGAGCATGGGT 39 Query 76805 ATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATA 76842 | ||| ||||| || |||||| ||||||| ||| || Sbjct 38 ACAATTCCGTTGGAGACACCATTGGTTCCAGCAATGTA 1 >seq1776 Length=16993 Score = 120 bits (132), Expect = 4e-22 Identities = 126/166 (76%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 76497 TTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGAC 76556 |||| ||| | | || ||| ||||||||| ||||||||| |||| ||||||| ||| Sbjct 7140 TTTCGTATAGGATGTACAACTTTTCAAATTCTTCTCCCCAATAATCAGCCAAACCGGGAG 7199 Query 76557 ATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGAT 76616 ||||| || || | ||| ||||| | ||||| | | || | || |||||| |||| Sbjct 7200 CCTCATTTGGGCAAAACAAAGACCAATGCCCATCACCTTGGACTCTTTCCATAAAAAGAT 7259 Query 76617 CAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTC 76662 |||||||||| ||||||| |||||||||||| | || | | ||||| Sbjct 7260 CAGGTATCCAAAGAGCAAAAAATAGATCTCGAGCTCGATGCTCTTC 7305 >seq65591 Length=6549 Score = 118 bits (130), Expect = 2e-21 Identities = 401/620 (65%), Gaps = 6/620 (1%) Strand=Plus/Minus Query 76598 ACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGT 76657 || || ||||| |||||||| || ||||| || || || || || || | | | Sbjct 3852 ACACGCTTCATGAAGAGATCGGGGATCCAGAGGGCGTAGAAGAGGTCGCGAGCACGAACC 3793 Query 76658 TCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGT 76717 || || || || ||||| || || ||||| | | | ||||| ||||| || Sbjct 3792 TCCTCCTTGCCGTGGTTCTTGCGGAGGTCGAGGAAAGCGAAGACATCAGCGTGCCAAGGC 3733 Query 76718 TCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCA 76777 || || || || || | |||| || || || || || ||||| || | |||||||||| Sbjct 3732 TCGAGGTAGATAGCGAAGGCACCGGGACGCTTGTTGCCACCCTGGTCAACATATCTGGCA 3673 Query 76778 GTGTTATTATAAACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAA 76837 ||||| || | || | | ||| |||| || ||||| || ||||| || || |||| Sbjct 3672 GTGTTGTTGAAGACACGGAGCATGGGAACAAGACCGTTCGAGGTACCGTTGGTACCAGCG 3613 Query 76838 ATATAACTTCCACATGCACGAATATTACTAATAGAT-AGGCCTATTCCTCCTGCCATTTT 76896 || ||| ||| |||||||| | | | | | || || || || || || | || Sbjct 3612 ATGTAAGAGCCAGTGGCACGAAT-GCAGTGAGCGTTGAGACCAATACCACCAGCGTTCTT 3554 Query 76897 AGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT 76956 ||||| | || ||| || | ||||| ||||| || || || ||||||| |||| Sbjct 3553 CGAGATCATGGCGCAGGTCTTGAGGGTGTCGTAGATACCATCAATCGAATCATCCTTCAT 3494 Query 76957 GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGG 77016 || | || || || || | ||| | || ||| || || | |||| ||||| Sbjct 3493 GTCGATCAGGAAGCATGAAGCGAGCTGAGGCTGGGGAGTGCCGGCGCTGAACAGAGTAGG 3434 Query 77017 AGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTAT 77076 || || || ||||| | || || | | ||||||||||| || | || || || Sbjct 3433 CGAGGCGTGGGTGAAGTACTTGAGCGACATCAAGTTGTATGTTTCGATGGCAGCCTCAAT 3374 Query 77077 ATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGT 77136 ||| || || || ||||| |||||||| | ||| ||||| |||| || || Sbjct 3373 GTCCTCGCCGTGGATGCCAACAGCAACACGCATGATCATCTGCTGGGGTCTCTCGGCAAC 3314 Query 77137 CTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 77196 ||| | | | | | | |||||| ||||| || || ||||| || || | ||| Sbjct 3313 CTTGCCCTCGAGTCTGAGGAGGTATGAACGCTCCAACGTCTTGAAACCGAAGTACTGGTA 3254 Query 77197 --TGAAAAGTCTCTTTCGTA 77214 ||||| ||||| ||||| Sbjct 3253 GTTGAAA--TCTCTGTCGTA 3236 >seq537914 Length=527 Score = 109 bits (120), Expect = 8e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 76993 AGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATT 77052 |||||| |||||||| | |||||||| |||||||||||||| || ||| | | || Sbjct 272 AGTTCCGGCATTAAAAAGGGTAGGAGAAGCATGAGTGAACCACCGTTGAGACATCATATG 213 Query 77053 GTATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCA 77111 |||||||| ||| | | || ||||| | ||| |||||||| |||| || | ||||| Sbjct 212 GTATGTTTTGATAGCAGAATCAATATCATCCTTG-TGAATTCCAACAGAAACCCTCATCA 154 Query 77112 ACATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCA 77171 |||| || ||||| | ||||||| ||| | | ||||| | ||| || | || | Sbjct 153 ACATGTGTTGAGGCCTTTCTACAACCTTTCCTTGGACCTTCAATAGGTAAGACCTCTCAA 94 Query 77172 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||| |||||||| || | || |||||||| || || || || Sbjct 93 GGGTTTTGAAACCAAAGTAATCATAGTCAAAGTCTCGATCATAGATGAT 45 >seq531702 Length=428 Score = 105 bits (116), Expect = 9e-18 Identities = 119/157 (76%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 76492 CTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACC 76551 ||||||||||||||| | || || |||||||| || |||||| ||| ||||||| Sbjct 203 CTCTCTTTCATATTGAGAGTACAATTTCTCAAATTCTTCACCCCAACAATCTGCCAAACC 262 Query 76552 AGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCATAA 76610 ||| | ||| | ||||| | ||||||||| || |||| | | || || | || ||| | Sbjct 263 TGGAGACTCACTAGGACAAAACAATGACCATTCTCCAT-TACTTTGGACTCTTTCCATGA 321 Query 76611 AGAGATCAGGTATCCATAGAGCAATAAATAGATCTCG 76647 |||||||||| | ||| |||||| ||||||||| || Sbjct 322 AGAGATCAGGCACCCAAAGAGCATAAAATAGATCCCG 358 >seq534550 Length=466 Score = 89.7 bits (98), Expect = 7e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 ||||| ||||| | ||| | ||||| | |||| | || | | |||||||| |||||| Sbjct 310 CCTCCTTGATCAACATAACGTGCAGTATCATTAAATACACGTAGCATTGGAACAATGCCA 369 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| |||||||||||| ||||||||| ||| |||||||| || || || Sbjct 370 TTGGATGTCCCATTTGTTCCACGAATATAACTGCCAGTGGCACGAATGTTGTGAACTGAG 429 Query 76874 AGGCCTATTCCTCCTGC 76890 | || |||||||| || Sbjct 430 ACACCAATTCCTCCAGC 446 >seq49730 Length=2875 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/203 (71%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 75737 AATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAA 75796 || ||||| ||| |||| ||||| |||||||||||| | | | ||||||||||| | | Sbjct 747 AAAACTCTGCGACTGTATATATTGGAGGTATATGGTTCAAAACACTCATTGTTTCCAAGA 688 Query 75797 ATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAAC-TATTTCTGAGACCATG 75855 || || || ||||||||||||||||| | || ||| || | |||||| | ||||| Sbjct 687 ATCTGGCTGGTGGAAGCAGTCGGCATAGG-GGCAACAAGAAGCGAATTTCTAACACCAT- 630 Query 75856 TGTTCTGATTTTATCT--TTTAGATATTTCCAATCCCAAAGATCTGATGGTACAACATCC 75913 | || ||| | |||| | ||| ||||| ||||| | | ||| ||| ||| || Sbjct 629 TCTT-GGATATCATCTCCCTAAGACCATTCCAGTCCCACCGGTTTGAAGGTGTTACACCC 571 Query 75914 CAGAGATCGTATTGTAGAATTCC 75936 || | || || |||||||| Sbjct 570 CACATGTCTGGCTGAAGAATTCC 548 >seq24333 Length=53945 Score = 84.2 bits (92), Expect = 3e-11 Identities = 103/141 (73%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 47001 AAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATAC 47060 ||||| | ||| ||||||||| || || |||||| || ||||||||||||| ||| Sbjct 10918 AAATCTTGCAGCCAAATTCTCCAATACAATCCCATCAGATGCTGCAAAAAATGCCAGTAC 10859 Query 47061 ATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGA 47120 ||| |||| ||| |||| || | || ||| || | ||| | |||| ||| | || Sbjct 10858 ATGGCTAATGAAAAATTTCTCTGAGTCAGACAGATTTTCCCACTGCTTGACATCCTGGGA 10799 Query 47121 TATATCTACTTCTTCAGCTGT 47141 || ||| || ||||||||||| Sbjct 10798 TAGATCAACCTCTTCAGCTGT 10778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708015910132800