Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq524375 140 4e-28 seq862 132 6e-26 seq7860 105 8e-18 seq4549 105 8e-18 seq13424 100 4e-16 seq345864 96.9 4e-15 >seq524375 Length=364 Score = 140 bits (154), Expect = 4e-28 Identities = 128/162 (79%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||||||||| ||||||||||| | |||||||| || | ||||||||||| || Sbjct 195 CTTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCT 254 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGCTTCATCGTTGCCTTCGTCGCTGCTCC 183314 ||||| || || || ||| | |||||| | || || |||||||| |||||||||| Sbjct 255 AATGATCCCTACCCTATTGACTGCAACCTCCGTGTTTATTATTGCCTTCATCGCTGCTCC 314 Query 183315 TCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTC 183356 ||||||||||||||| || ||||| || || ||| |||| || Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTC 356 >seq862 Length=327473 Score = 132 bits (146), Expect = 6e-26 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 186534 GGTGGTGCTCTGCTGTCAGCAATCCATGGTGTTACTGTAGAAAATACTCTTTATGAAGAT 186593 |||| ||||||||| | || || ||||||| ||| ||||||||||| | | ||||||| Sbjct 255137 GGTGCTGCTCTGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGAT 255196 Query 186594 GGCGAACAAGCAAACACATTCAAAGCATTCGATACGACGCAAGAAGAAGAAACCTATTCG 186653 || || ||||| |||||| | || | | | || |||| |||||||| ||||| Sbjct 255197 GGTGATGGTGCAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCA 255256 Query 186654 ATGGTCACTGCGAACAGATTCTGGTCACAGATCTTCGGAATTGCGTTTAGCAATAAGCGT 186713 |||||||| | ||| | || ||||| || ||||| || ||| | ||| |||||| | | Sbjct 255257 ATGGTCACCACTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACAT 255316 Query 186714 TGGCTTCATTTCTTCATGCTCTTTGT 186739 ||| | |||||||| ||| | ||||| Sbjct 255317 TGGTTACATTTCTTTATGTTTTTTGT 255342 >seq7860 Length=10955 Score = 105 bits (116), Expect = 8e-18 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 186212 AGGAGATATCATCCGCTGGTTCCAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGG 186271 ||| ||| | | || |||| ||| | || || || |||| |||||| || |||||||| Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 186272 AGCCTTTGCTCTCATAGGTTTCATGCTGCGACAGTTTGAAATCAGTCG-TCTCGTAGGTA 186330 || |||| || |||||||||||| | || || |||||| | ||| ||| || Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAAT 6595 Query 186331 TCCGTCCATACAATGCCATTGCTTTTTCTGGTCCTATCGCTGTCTTTGTTAGTGTATTCC 186390 | || || || ||||| || || || |||| ||| || ||||| |||||| ||||||| Sbjct 6594 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCT 6535 Query 186391 TCATCTACCCTCTTGGACAGTCCTCATGGTTCTTCGCTCC 186430 | || || || || || ||||| |||||||| || || Sbjct 6534 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq4549 Length=62305 Score = 105 bits (116), Expect = 8e-18 Identities = 200/294 (68%), Gaps = 3/294 (1%) Strand=Plus/Minus Query 186571 TAGAAAATACTCTTTATGAAGATGGCGAACA---AGCAAACACATTCAAAGCATTCGATA 186627 ||||||||||| | | |||||||| || | ||||| |||||| || || | | Sbjct 53480 TAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTTAACA 53421 Query 186628 CGACGCAAGAAGAAGAAACCTATTCGATGGTCACTGCGAACAGATTCTGGTCACAGATCT 186687 || |||| || |||| ||||| |||||||| || ||| || ||||| || |||| Sbjct 53420 TAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAAATCT 53361 Query 186688 TCGGAATTGCGTTTAGCAATAAGCGTTGGCTTCATTTCTTCATGCTCTTTGTTCCTGTTA 186747 | | |||| ||| | |||| ||||| | || ||||| || | ||||| || | | Sbjct 53360 TTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCAATAA 53301 Query 186748 TGGGTCTTTGGACCTCTTCCATTGGCATTATTGGTCTTGCTCTTAACCTTCGTGCTTATG 186807 ||| | || | | |||| || ||||||| |||| ||||| ||||| |||| Sbjct 53300 CTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCCTATG 53241 Query 186808 ACTTTGTAAGTCAGGAGGTGAGAGCAGCAGAGGATCCTGAGTTCGAGACGTTCT 186861 |||| | ||| || | | |||||| | |||||||| || ||||| |||| Sbjct 53240 ACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq13424 Length=38927 Score = 100 bits (110), Expect = 4e-16 Identities = 87/108 (81%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 183920 TGATCTTCCAGTATGCTTCGTTTAACAATTCTCGTTCTCTTCACTTCTTCCTTGCTGCTT 183979 |||||||||| |||||| || || |||||||||||| | || |||||||| || |||| Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 183980 GGCCAGTGGTCGGCATCTGGTTTACTGCTCTTGGTGTTAGCACTATGG 184027 |||| || || || |||||||| || ||| | ||| | |||||||||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 >seq345864 Length=152 Score = 96.9 bits (106), Expect = 4e-15 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 186417 TGGTTCTTCGCTCCCTCCTTTGGAGTCGCAGCAATCTTTAGATTCCTGTTGTTCCTCCAA 186476 ||||| || ||||| |||||||| ||||||||||| | ||| | ||||| ||||| Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 186477 GGATTCCACAACTGGACGTTGAATCCATTCCACATGATGGGTGTAGCAGGTATCCTTGGT 186536 || ||||| |||||||| | || || ||||| ||||||||||| || ||| | | || Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGGA 134 Query 186537 GGTGCTCTGCT 186547 | |||||| || Sbjct 135 GCTGCTCTTCT 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 617778775189800