Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq7860 138 1e-27 seq862 138 1e-27 seq4549 122 1e-22 seq524375 91.5 2e-13 seq345864 86.0 7e-12 seq13424 82.4 8e-11 >seq7860 Length=10955 Score = 138 bits (152), Expect = 1e-27 Identities = 164/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 165404 AGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTGGCGCTCCACGG 165463 |||||| || | || ||||| ||| | || || || ||||||||||| || |||||||| Sbjct 6713 AGGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGG 6654 Query 165464 AGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA-CTTATCGGTA 165522 || |||| ||| |||||||||||| | || || |||||||| || ||| || || | Sbjct 6653 CGCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT- 6595 Query 165523 TTCGTCCTTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTATTCGTTAGTGTTTTTC 165582 | || ||||| ||||| || || ||||||| ||| |||||||| || ||| ||| || Sbjct 6594 TGCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCT 6535 Query 165583 TTATGTATCCTCTGGGACAATCGTCCTGGTTCTTCGCACC 165622 | || ||||| || || || || |||||||| || || Sbjct 6534 TGATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCC 6495 >seq862 Length=327473 Score = 138 bits (152), Expect = 1e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 165736 TGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAG 165795 |||| | ||| |||||||||| ||| |||| |||||||| | |||||||||||| | Sbjct 255147 TGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTG 255206 Query 165796 CAAACACTTTCAAAGCATTTGATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTG 165855 |||| || ||| | || || | ||||| | || ||||||||||| |||||||| Sbjct 255207 CAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCA 255266 Query 165856 CTAACCGTTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACT 165915 ||||||| || ||||| || || ||||| ||| |||| |||||| | |||| | || | Sbjct 255267 CTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACATTGGTTACATT 255326 Query 165916 TCTTTATGCTCTTTGT 165931 |||||||| | ||||| Sbjct 255327 TCTTTATGTTTTTTGT 255342 >seq4549 Length=62305 Score = 122 bits (134), Expect = 1e-22 Identities = 206/298 (69%), Gaps = 3/298 (1%) Strand=Plus/Minus Query 165759 ACAGTAGAGAATACTTTGTATGAAGATGGTGAACAAG---CAAACACTTTCAAAGCATTT 165815 ||| |||| |||||||| | |||||||| ||| | | |||| || ||| || ||| Sbjct 53484 ACAATAGAAAATACTTTATTTGAAGATGATGATGATGGTGCAAATACATTCCGTGCTTTT 53425 Query 165816 GATAGTACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGTTTCTGGTCTCAG 165875 | | ||||| | | |||||||||| |||||||| ||||||| || ||||| || Sbjct 53424 AACATAACTCAAGCTAAATAAACTTATTCAATGGTCACCGCTAACCACTTTTGGTCCCAA 53365 Query 165876 ATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGCTTCACTTCTTTATGCTCTTTGTTCCT 165935 || |||| ||||||| | |||| ||||| | ||||||||||| | ||||| || Sbjct 53364 ATCTTTGAGGTTGCTTTTTCCGATAAATGTTGGTTACACTTCTTTATATTATTTGTACCA 53305 Query 165936 GTCATGGGACTTTGGACAAGTTCTATTGGTATCATTGGTCTCGCACTCAATCTTCGTGCT 165995 | | || | || | || || |||| || ||||||| | || || || ||||| Sbjct 53304 ATAACTGGTTTATGAATGAGGGCTCTTGGAATAGTTGGTCTACCTCTGAACCTACGTGCC 53245 Query 165996 TATGATTTTGTGTCTCAGGAGATTAGAGCTGCTGAGGATCCAGAGTTTGAAACGTTCT 166053 ||||| || | | ||| || || | || || | ||||| || ||||| || |||| Sbjct 53244 TATGACTTCATTTTTCAAGAAATCCGTGCAGCATAAGATCCTGAATTTGAGACTTTCT 53187 >seq524375 Length=364 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/122 (78%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 163968 TCGGTTGGTTCGGCGTCCTGATGATTCCCTGCCTGCTGGCAGCGAC-TACATGTTTCATC 164026 |||||||||| || || || ||||| || ||| || | || || | | ||||| || Sbjct 236 TCGGTTGGTTTGGTGTTCTAATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATT 294 Query 164027 ATCGCCTTCATCGGTGCTCCTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGT 164086 || |||||||||| |||||||||||||||||||||||| ||||| || || || |||| Sbjct 295 ATTGCCTTCATCGCTGCTCCTCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGC 354 Query 164087 TC 164088 || Sbjct 355 TC 356 >seq345864 Length=152 Score = 86.0 bits (94), Expect = 7e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 165609 TGGTTCTTCGCACCGTCGTTCGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAA 165668 ||||| || || || || || || |||||||||||||| ||| | | || ||||| Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 165669 GGGTTCCATAACTGGACGCTGAATCCCTTTCACATGATGGGCGTAGCAGGTATCTTAGGC 165728 || |||||||||||||| || || || || || |||||||| || || ||| | ||||| Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGGA 134 Query 165729 GGAGCATTGCTTTCTGC 165745 | || | |||| ||| Sbjct 135 GCTGCTCTTCTTTGTGC 151 >seq13424 Length=38927 Score = 82.4 bits (90), Expect = 8e-11 Identities = 83/108 (77%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 164652 TGATTTTCCAATACGCTTCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCAT 164711 |||| |||||||| ||| ||||| || || ||||| | || |||||||| || || | Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 164712 GGCCTGTTGTCGGTATCTGGTTTACTGCTCTGGGCGTTAGCACCATGG 164759 ||||||| || ||||||||||| || ||| | || | ||||| |||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553807177147800