Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031935.1 Length=186386 Score E Sequences producing significant alignments: (Bits) Value seq7860 141 1e-28 seq862 129 7e-25 seq524375 102 1e-16 seq5622 96.9 4e-15 seq13424 91.5 2e-13 seq345864 89.7 6e-13 >seq7860 Length=10955 Score = 141 bits (156), Expect = 1e-28 Identities = 160/212 (75%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 179112 CAACTTGGGGGACTATGGCCTTTTGTGGCGCTCCACGGTGCCTTCGCTCTCATAGGTTTC 179171 ||| | || || || ||| ||||||| || |||||||| || || | || ||||||||| Sbjct 6691 CAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGCGCTTTTGGACTAATAGGTTTC 6632 Query 179172 ATGCTTCGGCAGTTTGAAATCGCACG-TCTAGTCGGTATTCGTCCTTACAATGCAATCGC 179230 ||| | || || |||||| | || || ||| || | | || ||||| ||||||||||| Sbjct 6631 ATGTTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGACCTTATAATGCAATCGC 6573 Query 179231 GTTTTCTGGTCCAATTGCTGTCTTTGTGTCTGTTTTTCTCATGTATCCTCTCGGACAGTC 179290 || |||| |||||||||||| ||||| ||||| || | || ||||| || || ||||| Sbjct 6572 ATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTTGATTTATCCACTAGGTCAGTC 6513 Query 179291 CTCGTGGTTCTTTGCGCCGTCGTTTGGAGTTG 179322 |||||||||||||| ||||| |||| Sbjct 6512 TGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTG 6481 >seq862 Length=327473 Score = 129 bits (142), Expect = 7e-25 Identities = 146/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 179422 TGCTTTGTGCCATTCATGGTGCTACAGTAGAGAACACACTCTTTGAAGACAGTGACCAAT 179481 |||| ||||| |||||||||||||| |||| || || | |||||||| |||| Sbjct 255147 TGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTG 255206 Query 179482 CAAATACATTCAAGGCATTCGAGCCTACACAAGAAGAGGAGACCTATTCGATGGTTACTG 179541 ||||||||||| | || | | || || |||| || || || ||||| ||||| || Sbjct 255207 CAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCA 255266 Query 179542 CCAACCGTTTCTGGTCTCAGATCTTTGGTATCGCCTTCAGCAATAAGCGTTGGCTACATT 179601 | ||||| || ||||| || |||||||| || | || |||||| | |||| |||||| Sbjct 255267 CTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACATTGGTTACATT 255326 Query 179602 TCTTTATGTTGTTTGT 179617 |||||||||| ||||| Sbjct 255327 TCTTTATGTTTTTTGT 255342 >seq524375 Length=364 Score = 102 bits (112), Expect = 1e-16 Identities = 126/170 (74%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 177598 TTCTGTAACTGGGTAACCTCCACCAACAATCGTCTGTATGTCGGTTGGTTCGGTGTCCTG 177657 ||||| | ||||| ||| ||| | || || || || |||||||||| ||||| || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 177658 ATGATCCCTACGCTGCTCGCTGCTGCTATC-TGTTTCATCGTCGCTTTCGTCGCTGCTCC 177716 ||||||||||| || | |||| | | ||||| || | || ||| |||||||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 177717 TCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCCCTGATGT 177766 ||||||||||||||| || |||||||| || || |||| || || ||| Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTTGCTGT 364 >seq5622 Length=97820 Score = 96.9 bits (106), Expect = 4e-15 Identities = 101/133 (76%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 179719 ATCCTGAGTTCGAGACGTTCTATACCAAGAACATCCTATTGAATGAAGGTCTACGTGCTT 179778 || |||| || ||||| ||||| ||||| || | || || ||||||||| | |||||| Sbjct 54979 ATACTGAATTTGAGACTTTCTACACCAAAAAAAATCTTTTAAATGAAGGTATTTGTGCTT 54920 Query 179779 GGATGGCACCAGTCGATCAACCACATGAAAACTTTGTATTTCCTGAAGAAGTATTGCCAA 179838 |||||||| | |||||||| ||||||||| || |||| ||||| || || | || Sbjct 54919 GGATGGCAGCTCAAGATCAACCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCC 54860 Query 179839 GAGGCAACGCTCT 179851 | || |||||||| Sbjct 54859 GTGGAAACGCTCT 54847 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 178322 TGATCTTCCAATACGCATCCTTCAACAACTCCCGTTCGCTGCACTTCTTCCTCGCAGCAT 178381 ||||||||||||| || ||||| || || ||||| | || |||||||| || || | Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 178382 GGCCTGTTGTCGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGG 178429 ||||||| || |||||||||||||| ||| | ||| | ||||| |||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 >seq345864 Length=152 Score = 89.7 bits (98), Expect = 6e-13 Identities = 102/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 179295 TGGTTCTTTGCGCCGTCGTTTGGAGTTGCAGCGATTTTCCGCTTCCTACTCTTCCTACAG 179354 ||||| ||||| || |||||||||||||| || ||||| ||| | | || | || Sbjct 15 TGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCATTTTGTTTTTCCAA 74 Query 179355 GGCTTCCACAACTGGACGCTCAACCCGTTCCACATGATGGGTGTAGCAGGTATCCTGGGC 179414 || ||||| |||||||| || ||||| ||||| ||||||||||| || ||| | | || Sbjct 75 GGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGGCTGGTGTATTAGGA 134 Query 179415 GGAGCATTGCTTTGTGC 179431 | || | |||||||| Sbjct 135 GCTGCTCTTCTTTGTGC 151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592193313896400