Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Betula_20nana_20[genbank_20GCA_5F000327005.1_202012-12-03] 551,915 sequences; 564,011,153 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq862 138 1e-27 seq7860 129 7e-25 seq524375 123 3e-23 seq345864 116 4e-21 seq13424 91.5 2e-13 >seq862 Length=327473 Score = 138 bits (152), Expect = 1e-27 Identities = 148/196 (76%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 171178 TGCTTTCTGCAATTCATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGATCAAG 171237 |||| | ||| |||||||||| ||| |||| |||||||| | ||||||||||||| | Sbjct 255147 TGCTATGTGCTATTCATGGTGCTACCATAGAAAATACTTTATTTGAAGATGGTGATGGTG 255206 Query 171238 CAAACACCTTTAAGGCATTTGACACGACTCAGGAGGAAGAGACATATTCTATGGTCACTG 171297 |||| || || | || || || | ||||| | ||||| || ||||| |||||||| Sbjct 255207 CAAATACATTCCATGCTATTAACCCAACTCAAGTTGAAGAAACTTATTCAATGGTCACCA 255266 Query 171298 CTAATCGTTTCTGGTCGCAGATTTTTGGTATCGCGTTCAGCAATAAGCGTTGGTTGCATT 171357 |||| || || ||||| || || ||||| || | || |||||| | |||||| |||| Sbjct 255267 CTAACCGCTTTTGGTCCCAAATCTTTGGGATTACTTTTTCCAATAAACATTGGTTACATT 255326 Query 171358 TCTTTATGCTGTTTGT 171373 |||||||| | ||||| Sbjct 255327 TCTTTATGTTTTTTGT 255342 >seq7860 Length=10955 Score = 129 bits (142), Expect = 7e-25 Identities = 170/233 (73%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 170847 GGGGATTTCCAACGCTGGTTACAACTTGGGGGACTCTGGAATTTTGTGGCGCTCCACGGA 170906 |||||||| || |||| ||| | || || || |||| |||||| || |||||||| Sbjct 6712 GGGGATTTTACTCGTTGGTGTCAATTAGGCGGTCTGTGGACTTTTGTTGCTCTCCACGGC 6653 Query 170907 GCCTTTGCTCTCATAGGTTTCATGCTTCGGCAGTTTGAAATCAGTCG-TCTCGTAGGGAT 170965 || |||| || |||||||||||| | || || |||||| | ||| ||| || | Sbjct 6652 GCTTTTGGACTAATAGGTTTCATGTTACGTCAATTTGAACTTGCTCGATCT-GTTCAATT 6594 Query 170966 TAGACCGTACAATGCAATCGCTTTCTCTGGTCCTATCGCTGTGTTTGTCAGCGTGTTCCT 171025 |||| || ||||||||||| ||||||| ||| || ||||| ||||| || ||| | Sbjct 6593 GCGACCTTATAATGCAATCGCATTCTCTGCTCCAATTGCTGTTTTTGTTTCTGTATTCTT 6534 Query 171026 CATCTATCCTCTTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTG 171078 || ||||| || || ||||| |||||||||| || ||| ||||| |||| Sbjct 6533 GATTTATCCACTAGGTCAGTCTGGTTGGTTCTTTGCGCCTAGTTTTGGTGTTG 6481 >seq524375 Length=364 Score = 123 bits (136), Expect = 3e-23 Identities = 131/170 (77%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| | ||||| ||| |||||| ||||| || || |||||||||| || || || Sbjct 196 TTCTGCGAATGGGTTACCAGCACTGAAAACCGCCTTTACATCGGTTGGTTTGGTGTTCTA 255 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACT-TGTTTCATCATCGCCTTCATCGGTGCTCC 169470 |||||||| ||| || | |||||| | ||||| || || |||||||||| |||||| Sbjct 256 ATGATCCCTACCCTATTGACTGCAACCTCCGTGTTT-ATTATTGCCTTCATCGCTGCTCC 314 Query 169471 CCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGT 169520 |||||||||||||| || ||||| || || ||| |||| ||| || ||| Sbjct 315 TCCTGTGGACATCGATGGTATCCGTGAGCCTGTTTCTGGCTCTTTGCTGT 364 >seq345864 Length=152 Score = 116 bits (128), Expect = 4e-21 Identities = 117/152 (77%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 171037 TTGGGCAGTCAAGTTGGTTCTTCGCACCTTCCTTTGGAGTTGCAGCAATCTTCCGCTTCC 171096 |||| || ||| ||||||| || || || ||||||||||||||||||||||| ||| Sbjct 1 TTGGTCAATCAGGTTGGTTTTTTGCTCCAAGTTTTGGAGTTGCAGCAATCTTCCGTTTCA 60 Query 171097 TGCTCTTCCTGCAAGGTTTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTTG 171156 | | || | ||||||||||| ||||||||||| || || || |||||||||||||| | Sbjct 61 TTTTGTTTTTCCAAGGTTTCCATAACTGGACACTAAACCCTTTCCATATGATGGGTGTGG 120 Query 171157 CAGGTATCCTCGGCGGTGCATTGCTTTCTGCA 171188 | ||| | | || | ||| | |||| |||| Sbjct 121 CTGGTGTATTAGGAGCTGCTCTTCTTTGTGCA 152 >seq13424 Length=38927 Score = 91.5 bits (100), Expect = 2e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 170076 TGATCTTCCAATACGCTTCCTTCAACAACTCCCGTTCACTGCACTTCTTCCTCGCAGCAT 170135 ||||||||||||| ||| ||||| || || ||||| | || |||||||| || || | Sbjct 6331 TGATCTTCCAATATGCTAGTTTCAATAATTCTCGTTCTTTACATTTCTTCCTAGCGGCTT 6272 Query 170136 GGCCTGTTGTTGGCATCTGGTTCACCGCTCTTGGTGTCTCCACGATGG 170183 ||||||| || || ||||||||||||||| | ||| || ||| |||| Sbjct 6271 GGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATCAGCACTATGG 6224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588112860250800