Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Boechera_20stricta_20[genbank_20GCA_5F002079875.1_202017-04-05] 1,944 sequences; 188,794,588 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1639 141 2e-28 seq1590 100 6e-16 seq1752 98.7 2e-15 seq1690 98.7 2e-15 seq1429 98.7 2e-15 seq1301 98.7 2e-15 seq1088 98.7 2e-15 seq403 98.7 2e-15 seq329 98.7 2e-15 seq1810 95.1 3e-14 seq1626 95.1 3e-14 seq1728 86.0 1e-11 seq741 86.0 1e-11 seq1923 84.2 5e-11 >seq1639 Length=5101707 Score = 141 bits (156), Expect = 2e-28 Identities = 570/880 (65%), Gaps = 16/880 (2%) Strand=Plus/Minus Query 229750 TTCTCTGCGTTCCCAATCCAATATCCCGATATGTGGGATATGTACAAGAAGGCGGTGGCA 229809 |||| | |||||||||||| || || || || ||||| ||||||||||| || | ||| Sbjct 2280334 TTCTGTATGTTCCCAATCCACTACCCAGAGATCTGGGAGATGTACAAGAAAGCCGAAGCA 2280275 Query 229810 ACTTTCTGGACCACTGAGGAAGTTCCTCTGAACGC-AGAC-GTCGTCGACTGGCGTGAGA 229867 | ||||||||| |||| ||||| ||| | | | |||| ||| ||| ||| | | Sbjct 2280274 TCGTTCTGGACCGCTGAAGAAGTAGATCT-ATCACAAGACAATCG-CGATTGGGAGAACA 2280217 Query 229868 AACTCAATGACGACGAACGTCATTTCATCAAACACATCCTAGGTTTTTTCGCAGGCTCCG 229927 | ||||| |||| |||||||| |||||||||||| |||| | ||| ||||| | || | Sbjct 2280216 ATCTCAACGACGGTGAACGTCACTTCATCAAACACGTCCTCGCTTTCTTCGCCGCATCTG 2280157 Query 229928 ATGGTATTGTGATGGAAAATCT-GCAGACCAACTTTAGTGT-GGAAGTAACGGTTCCAGA 229985 | || || ||| | || ||||| || | | || ||| || || || | || Sbjct 2280156 ACGGAATCGTGTTAGAGAATCTCGCTTCTCGA--TTCATGTCCGATGTTCAAGTCTCGGA 2280099 Query 229986 GGCACGGCAATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGC 230045 ||| || || |||| || ||| | | ||| || || || || ||| Sbjct 2280098 GGCGCGTGCTTTCTATGGTTTCCAGATCGCGATTGAAAACATTCACTCCGAGATGTATAG 2280039 Query 230046 TCTGCTTATCGACGCGCTTATTTCCGACGAGCAAGAACGGAACGAGCTTTTTGATGCCAT 230105 ||| ||| |||| || ||| || | |||| | | | || ||| || || Sbjct 2280038 TCTCCTTCTCGATACGTATATCAAAGATAACAAAGAGAGAGATCATCTATTTCGCGCGAT 2279979 Query 230106 TGAAAACATCCCGGCGGTTCATAACAAGGCAAAGTGGGCTCAGAAATGGCTAGAACCTGG 230165 ||||| || || || || || || ||||||| ||||||| | || Sbjct 2279978 TGAAACGATTCCTTGCGTCGCGAAGAAAGCTCAGTGGGCGATGAAATGGATCGACGGATC 2279919 Query 230166 TAAATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGG 230225 | || | || || || || | || || | | ||||||||||| || | || || || Sbjct 2279918 TCAAACCTTCGCTGAACGAATTGTAGCTTTCGCTTGTGTTGAAGGCATCTTCTTCTCTGG 2279859 Query 230226 GAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTC 230285 || || ||| ||||||| ||||| ||| |||| | |||||||| | | | || Sbjct 2279858 AAGCTTTTGCTCCATCTTCTGGCTTAAGAAACGAGGTCTCATGCCTGGGTTAACTTTCTC 2279799 Query 230286 TAACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTA-TGTATT 230344 ||||| || ||| || ||||| || | || | | || || ||||| | || Sbjct 2279798 AAACGAATTGATCTCACGAGACGAAGGCTTACA-CTGCGATTTCGCTTGCTTACTCTACA 2279740 Query 230345 CAAAGCTCCAGAACAAGCTACCATTCGAG-ACG-GTCAAACAAATCATTACAGAAGCAGT 230402 || ||| | | ||||| | | || ||| |||| |||| || || || || Sbjct 2279739 CACTCCTCAAAACAAAGCT--GAGTGAAGAACGTATCAAGTCAATCGTTTGTGATGCGGT 2279682 Query 230403 TGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGCCTT-ATTGGCATGAACG 230461 || | || | ||||| | || ||||| |||| || ||| || |||| |||||| Sbjct 2279681 CGAGATTGAGAGAGAGTTTGTGTGCGACGCGCTTCCGTG-CGCGTTGGTTGGTATGAACC 2279623 Query 230462 CTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTT 230521 ||| | ||| | ||||| || || || || || || | |||| | ||| ||||| | Sbjct 2279622 GTGATTTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGCTTTTGGGTGCTCTTGGGT 2279563 Query 230522 ACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAG 230581 ||| || |||||| | | || ||||||| | ||||| || || || ||||| | Sbjct 2279562 ACGGTAAGGTGTACGGTGCGACTAATCCCTTTGATTGGATGGAACTAATCTCTCTTCAGG 2279503 Query 230582 GGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCA 230621 |||| |||||||| ||||| || ||||| |||| || || Sbjct 2279502 GGAAAACCAACTTTTTCGAGAAACGTGTTGGTGATTACCA 2279463 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 3939172 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3939231 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3939232 CCCCACGGTGGGC 3939244 >seq1590 Length=335983 Score = 100 bits (110), Expect = 6e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 ||||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 204640 TGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 204699 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 204700 CCCCACGGTGGGC 204712 >seq1752 Length=3388531 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 1045934 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 1045875 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 1045874 CCCACGGTGGGC 1045863 >seq1690 Length=820647 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 194396 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 194455 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 194456 CCCACGGTGGGC 194467 >seq1429 Length=3043751 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 42996 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 42937 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 42936 CCCACGGTGGGC 42925 >seq1301 Length=1695270 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 261622 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 261563 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 261562 CCCACGGTGGGC 261551 >seq1088 Length=3726791 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 829661 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 829602 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 829601 CCCACGGTGGGC 829590 >seq403 Length=801408 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 143119 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 143060 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 143059 CCCACGGTGGGC 143048 >seq329 Length=151530 Score = 98.7 bits (108), Expect = 2e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||||| Sbjct 71986 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 72045 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 72046 CCCACGGTGGGC 72057 >seq1810 Length=8348134 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 373910 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGG 373851 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 373850 CCCACGGTGGGC 373839 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || |||||||||||||||| | Sbjct 413461 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAAC 413520 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 413521 CCCACGGTGGGC 413532 >seq1626 Length=708261 Score = 95.1 bits (104), Expect = 3e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| || || |||| || ||||||||||||||||| Sbjct 544799 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGT 544740 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 544739 CCCACGGTGGGC 544728 >seq1728 Length=1434513 Score = 86.0 bits (94), Expect = 1e-11 Identities = 71/87 (82%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 61373 AAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATGTGGTTGATGTTGCAACAAGA 61432 |||||||||||||| ||| | ||| ||| | || || ||||||||||||||||| ||||| Sbjct 580672 AAGAGATTGGGGATTTGCAGGAGACTATGTGGAAGCAATGTGGTTGATGTTGCAGCAAGA 580731 Query 61433 TACTCCAGATGACTACGTTATTGCGAC 61459 | |||||||| |||||| | || || Sbjct 580732 GAAGCCAGATGATTACGTTGTGGCAAC 580758 >seq741 Length=899227 Score = 86.0 bits (94), Expect = 1e-11 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 |||||||||||||||| |||||||||| | || |||| || |||||||||||||||| Sbjct 608113 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAAGCTCTTAACCTTGTGGTCGTGGGTTCGAAA 608172 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 608173 CCCACGGTGGGC 608184 >seq1923 Length=313514 Score = 84.2 bits (92), Expect = 5e-11 Identities = 58/65 (89%), Gaps = 2/65 (3%) Strand=Plus/Plus Query 165258 CCATAGCTCAGTTGGTTAGAGCGTTCGACTGTTAATCGAGAGGTCACCGGTTCGAACCCG 165317 |||||||||||| | |||||| |||||||| |||||||||||||||||||||||||| Sbjct 59265 CCATAGCTCAGTGG--TAGAGCATTCGACTGCAGATCGAGAGGTCACCGGTTCGAACCCG 59322 Query 165318 GTTGG 165322 ||||| Sbjct 59323 GTTGG 59327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057797652248720